RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 SETSIPP0DME0 302 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 LHX1P48742 406 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 AARSP49588 968 aaKnown RBP eCLIP13.62□□□□□ -0.23
VPS13D-205ENST00000473099 SNX16P57768 344 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 UPP1Q16831 310 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 PAPD7Q5XG87 772 aaKnown RBP13.62□□□□□ -0.23
VPS13D-205ENST00000473099 DCLRE1AQ6PJP8 1040 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 MON1BQ7L1V2 547 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 ADGRF2Q8IZF7 708 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 ABI1Q8IZP0 508 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 CRYBG2Q8N1P7 616 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 OR6B3Q8NGW1 331 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 PAWRQ96IZ0 340 aaKnown RBP13.62□□□□□ -0.23
VPS13D-205ENST00000473099 HEXIM2Q96MH2 286 aaKnown RBP13.62□□□□□ -0.23
VPS13D-205ENST00000473099 ELOVL4Q9GZR5 314 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 ADAM22Q9P0K1 906 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 CTTNBP2NLQ9P2B4 639 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 CNOT8Q9UFF9 292 aaKnown RBP13.62□□□□□ -0.23
VPS13D-205ENST00000473099 SALL4Q9UJQ4 1053 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 CDC23Q9UJX2 597 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 DSEQ9UL01 958 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 LRFN2Q9ULH4 789 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.62□□□□□ -0.23
VPS13D-205ENST00000473099 INPP5FQ9Y2H2 1132 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 PATJQ8NI35 1801 aa13.62□□□□□ -0.23
VPS13D-205ENST00000473099 NLRC5Q86WI3 1866 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 GRID2IPA4D2P6 1211 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 A8MXQ7 604 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 TMEM189-UBE2V1I3L0A0 370 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 O00370 1275 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 SPTLC1O15269 473 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 EFCAB14O75071 495 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 PALMO75781 387 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 POMCP01189 267 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 ODC1P11926 461 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 TCP1P17987 556 aaKnown RBP13.61□□□□□ -0.23
VPS13D-205ENST00000473099 MMP8P22894 467 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 GNL1P36915 607 aaPredicted RBP13.61□□□□□ -0.23
VPS13D-205ENST00000473099 CLCNKBP51801 687 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 TAP1Q03518 808 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 GPNMBQ14956 572 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 ARHGAP17Q68EM7 881 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 C11orf63Q6NUN7 778 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 CNKSR3Q6P9H4 555 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 LCLAT1Q6UWP7 414 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 DSTYKQ6XUX3 929 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 SLFN11Q7Z7L1 901 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 NPAS4Q8IUM7 802 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 TMEM130Q8N3G9 435 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 DIS3LQ8TF46 1054 aaKnown RBP13.61□□□□□ -0.23
VPS13D-205ENST00000473099 TFAP2BQ92481 460 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 ARHGEF26Q96DR7 871 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 SENP8Q96LD8 212 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 FAM193BQ96PV7 902 aaPredicted RBP13.61□□□□□ -0.23
VPS13D-205ENST00000473099 TWNKQ96RR1 684 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 MRPL45Q9BRJ2 306 aaKnown RBP13.61□□□□□ -0.23
VPS13D-205ENST00000473099 MRPL9Q9BYD2 267 aaKnown RBP13.61□□□□□ -0.23
VPS13D-205ENST00000473099 PPP1R12CQ9BZL4 782 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 WNT8AQ9H1J5 351 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 WDR35Q9P2L0 1181 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 HESX1Q9UBX0 185 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 L1RE1Q9UN81 338 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 MRFAP1Q9Y605 127 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 SAR1BQ9Y6B6 198 aa13.61□□□□□ -0.23
VPS13D-205ENST00000473099 MKI67P46013 3256 aaKnown RBP13.6□□□□□ -0.23
VPS13D-205ENST00000473099 CASTOR2A6NHX0 329 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 FANCGO15287 622 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 PFKMP08237 780 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 CYP2C18P33260 490 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 GSCP56915 257 aaPredicted RBP13.6□□□□□ -0.23
VPS13D-205ENST00000473099 TUBB4BP68371 445 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 RNASELQ05823 741 aaKnown RBP13.6□□□□□ -0.23
VPS13D-205ENST00000473099 DSC1Q08554 894 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 IKBKEQ14164 716 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 WHAMMP3Q1A5X7 153 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 CLLU1OSQ5K130 101 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 DAAM2Q86T65 1068 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 ERICH1Q86X53 443 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 METTL23Q86XA0 190 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 PASD1Q8IV76 773 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 PDCL2Q8N4E4 241 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 LRRC57Q8N9N7 239 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 ZNF564Q8TBZ8 553 aaPredicted RBP13.6□□□□□ -0.23
VPS13D-205ENST00000473099 KBTBD7Q8WVZ9 684 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 CPA5Q8WXQ8 436 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 NUP85Q9BW27 656 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 RNF19AQ9NV58 838 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 PARVAQ9NVD7 372 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 HMGXB4Q9UGU5 601 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 AMFRQ9UKV5 643 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 STXBP5LQ9Y2K9 1186 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 HYOU1Q9Y4L1 999 aa13.6□□□□□ -0.23
VPS13D-205ENST00000473099 PTPRSQ13332 1948 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 M0QYV0 167 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 CES2O00748 559 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 RIOK3O14730 519 aaKnown RBP13.59□□□□□ -0.23
VPS13D-205ENST00000473099 GABRDO14764 452 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 KIAA0355O15063 1070 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 TRAPPC3O43617 180 aa13.59□□□□□ -0.23
VPS13D-205ENST00000473099 B3GAT3O94766 335 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms