RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CFAP36Q96G28 342 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 RBM15Q96T37 977 aaKnown RBP eCLIP14.5□□□□□ -0.092e-12■□□□□ 9
CCDC88A-211ENST00000471947 STRA6Q9BX79 667 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 AP5M1Q9H0R1 490 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 INTUQ9ULD6 942 aa14.5□□□□□ -0.09
CCDC88A-211ENST00000471947 EXOC1LA0A1B0GW35 172 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CXCL11O14625 94 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 KIAA0391O15091 583 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 SAT1P21673 171 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 ATXN1P54253 815 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CXCL17Q6UXB2 119 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 TEX2Q8IWB9 1127 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 PALM2Q8IXS6 379 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 C1orf127Q8N9H9 656 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 LPPQ93052 612 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 ZFP42Q96MM3 310 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CFAP57Q96MR6 1250 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CPXM1Q96SM3 734 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 MAGEB5Q9BZ81 275 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 IKBKGQ9Y6K9 419 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 FAM169AQ9Y6X4 670 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CITO14578 2027 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 ACKR2O00590 384 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CAPN9O14815 690 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CCDC130P13994 396 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 GOLGA7BQ2TAP0 167 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 PTPN20Q4JDL3 420 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 CCDC121Q6ZUS5 278 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 GPR142Q7Z601 462 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 C12orf42Q96LP6 360 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 C12orf65Q9H3J6 166 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 VIPAS39Q9H9C1 493 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 NUDT5Q9UKK9 219 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 A0A0A6YYK5 440 aaPredicted RBP14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 E5RJQ4 531 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 PRPSAP2O60256 369 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 PROSCO94903 275 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 STX2P32856 288 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 ACTL9Q8TC94 416 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 NTPCRQ9BSD7 190 aaKnown RBP14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 TUBGCP4Q9UGJ1 667 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 PCDHA3Q9Y5H8 950 aa14.49□□□□□ -0.09
CCDC88A-211ENST00000471947 A0A0G2JLL6 359 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 NUGGCQ68CJ6 796 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 PRRT2Q7Z6L0 340 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 CCDC63Q8NA47 563 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 PIWIL1Q96J94 861 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 CCT8L2Q96SF2 557 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 C2orf40Q9H1Z8 148 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 STXBP5LQ9Y2K9 1186 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 PPFIA4O75335 1185 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 GBP2P32456 591 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 CA8P35219 290 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 PNMA8AQ86V59 439 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 IQCKQ8N0W5 287 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 CALR3Q96L12 384 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 SNX25Q9H3E2 840 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 KCNG1Q9UIX4 513 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 TSPAN16Q9UKR8 245 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 SCINQ9Y6U3 715 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 NFASCO94856 1347 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 TGFB3P10600 412 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 SMPD1P17405 629 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 PPP2R2AP63151 447 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 OTUD4Q01804 1114 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 OGDHQ02218 1023 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 GAD2Q05329 585 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 ACVR2BQ13705 512 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 BYSLQ13895 437 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 MYBPC2Q14324 1141 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 KCTD17Q8N5Z5 321 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 ATXN7L3BQ96GX2 97 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 JPH2Q9BR39 696 aaPredicted RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 RNF39Q9H2S5 420 aa14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 GOLGA4Q13439 2230 aaKnown RBP14.48□□□□□ -0.09
CCDC88A-211ENST00000471947 CLDN5O00501 218 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 CETPP11597 493 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 MDH1P40925 334 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 PTPN11Q06124 597 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 LAMC2Q13753 1193 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 FASTKD3Q14CZ7 662 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 ENOSF1Q7L5Y1 443 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 FAM131BQ86XD5 332 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 AGAP3Q96P47 875 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 CCDC77Q9BR77 488 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 IP6K2Q9UHH9 426 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 CHMP2BQ9UQN3 213 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 IQCA1LA6NCM1 817 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 EIF3HO15372 352 aaKnown RBP eCLIP14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 ASS1P00966 412 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 P4HA1P13674 534 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 MYO1EQ12965 1108 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 PPIL2Q13356 520 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 FBXW10Q5XX13 1052 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 NLRP14Q86W24 1093 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 PAF1Q8N7H5 531 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 KIF9Q9HAQ2 790 aa14.47□□□□□ -0.09
CCDC88A-211ENST00000471947 CASTOR2A6NHX0 329 aa14.46□□□□□ -0.09
CCDC88A-211ENST00000471947 PODXLO00592 558 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms