RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 NLRP9Q7RTR0 991 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 KBTBD7Q8WVZ9 684 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 MAELQ96JY0 434 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 BIRC8Q96P09 236 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 REEP2Q9BRK0 252 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 BAIAP2L1Q9UHR4 511 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 B3GNT3Q9Y2A9 372 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 PRSS51A0A1B0GVH4 220 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 NVLO15381 856 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CYP2D6P10635 497 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 RPL34P49207 117 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 NCKAP1LP55160 1127 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 LACTBP83111 547 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TBL3Q12788 808 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 IKZF1Q13422 519 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 PRKG1Q13976 671 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 DCAKDQ8WVC6 231 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TRIM11Q96F44 468 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 RAB3IPQ96QF0 476 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 MAPK8IP1Q9UQF2 711 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 VWA7Q9Y334 891 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TELO2Q9Y4R8 837 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 E9PMD0 336 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 SLC22A1O15245 554 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CETN1Q12798 172 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 MON1BQ7L1V2 547 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CCDC125Q86Z20 511 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 GPKOWQ92917 476 aaPredicted RBP eCLIP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 SNF8Q96H20 258 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ANO3Q9BYT9 981 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 UNKQ9C0B0 810 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 R3HDM2Q9Y2K5 976 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 SH3BP1Q9Y3L3 701 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ENTPD5O75356 428 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ECEL1O95672 775 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ITGAVP06756 1048 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ACAT1P24752 427 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 DRAP1Q14919 205 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 STEAP4Q687X5 459 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 DDX17Q92841 729 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 CCDC106Q9BWC9 280 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 UBE2OQ9C0C9 1292 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 INTS2Q9H0H0 1204 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 PIDD1Q9HB75 910 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 POLD4Q9HCU8 107 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 LARSQ9P2J5 1176 aaKnown RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF639Q9UID6 485 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 RGPD3A6NKT7 1758 aaPredicted RBP5.64□□□□□ -1.51
SYNE1-220ENST00000471834 RGPD4Q7Z3J3 1758 aa5.64□□□□□ -1.51
SYNE1-220ENST00000471834 TMCC1O94876 653 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 FBXO21O94952 628 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ASLP04424 464 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MMP8P22894 467 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 HARS2P49590 506 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CES4AQ5XG92 561 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 NAT8LQ8N9F0 302 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 RDM1Q8NG50 284 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TOP1MTQ969P6 601 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ERP27Q96DN0 273 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TRIM7Q9C029 511 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 AZI2Q9H6S1 392 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 DNAJC12Q9UKB3 198 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 AGTPBP1Q9UPW5 1226 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 NAALAD2Q9Y3Q0 740 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MYH14Q7Z406 1995 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 A0A088AWK7 358 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 H3BNX3 289 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 BACH1O14867 736 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ALDH1A2O94788 518 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CASP4P49662 377 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 DENND2CQ68D51 928 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 RWDD4Q6NW29 188 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 OTOP1Q7RTM1 612 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MFSD2AQ8NA29 543 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 PIGSQ96S52 555 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZFYVE28Q9HCC9 887 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TAS2R14Q9NYV8 317 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MTO1Q9Y2Z2 717 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZBBXA8MT70 800 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ONECUT3O60422 494 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SLC5A2P31639 672 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF252P-AS1Q0IIN9 211 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 RFTN1Q14699 578 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 HERC3Q15034 1050 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ARHGAP22Q7Z5H3 698 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SFR1Q86XK3 245 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ZBED8Q8IZ13 594 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CMASQ8NFW8 434 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 WDR60Q8WVS4 1066 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 GFM2Q969S9 779 aaKnown RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 TRAF4Q9BUZ4 470 aaPredicted RBP5.63□□□□□ -1.51
SYNE1-220ENST00000471834 KIAA1683Q9H0B3 1180 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 ECT2Q9H8V3 914 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 MOCS1Q9NZB8 636 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 RAB23Q9ULC3 237 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 RABGAP1Q9Y3P9 1069 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 CDK8P49336 464 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 SLC1A5Q15758 541 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 KYNUQ16719 465 aa5.63□□□□□ -1.51
SYNE1-220ENST00000471834 BNC2Q6ZN30 1099 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms