RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 CFAP73A6NFT4 308 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 SLC4A1P02730 911 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 MYL6P60660 151 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 FOXD4Q12950 439 aaPredicted RBP11.24□□□□□ -0.61
CHD3-208ENST00000470531 PTK7Q13308 1070 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 MPP2Q14168 576 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 RABGAP1LQ5R372 815 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 RAPH1Q70E73 1250 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 NUDCD3Q8IVD9 361 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 USP6NLQ92738 828 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 TMEM8AQ9HCN3 771 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 UVRAGQ9P2Y5 699 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 SCOCQ9UIL1 159 aa11.24□□□□□ -0.61
CHD3-208ENST00000470531 ZMYND8Q9ULU4 1186 aaPredicted RBP11.24□□□□□ -0.61
CHD3-208ENST00000470531 AFF2P51816 1311 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 TBX3O15119 743 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 EIF3DO15371 548 aaKnown RBP eCLIP11.23□□□□□ -0.61
CHD3-208ENST00000470531 PSMD10O75832 226 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 DCTN3O75935 186 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 PAEPP09466 180 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 GHRP10912 638 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 MYL2P10916 166 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 MMP13P45452 471 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 SERPINB4P48594 390 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 GABPAQ06546 454 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ZNF568Q3ZCX4 644 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 SLC30A9Q6PML9 568 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 MCOLN2Q8IZK6 566 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ZDHHC14Q8IZN3 488 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ZNF483Q8TF39 744 aaPredicted RBP11.23□□□□□ -0.61
CHD3-208ENST00000470531 CLPTM1LQ96KA5 538 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 DCLK3Q9C098 648 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ANLNQ9NQW6 1124 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ZNF70Q9UC06 446 aaPredicted RBP11.23□□□□□ -0.61
CHD3-208ENST00000470531 TELO2Q9Y4R8 837 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 TRIM49D1C9J1S8 452 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 CREB3O43889 395 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 PRPSAP2O60256 369 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 PDGFRBP09619 1106 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 CHRNB2P17787 502 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 SMARCA1P28370 1054 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 RFC5P40937 340 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 KRT27Q7Z3Y8 459 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 BBOF1Q8ND07 529 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 DEPDC1BQ8WUY9 529 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 DNAJC9Q8WXX5 260 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ABTB1Q969K4 478 aaPredicted RBP11.23□□□□□ -0.61
CHD3-208ENST00000470531 DHX35Q9H5Z1 703 aaKnown RBP11.23□□□□□ -0.61
CHD3-208ENST00000470531 PCDHA3Q9Y5H8 950 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 CYP3A7-CYP3A51PA0A087WV96 503 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 MAP3K7O43318 606 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 CIITAP33076 1130 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 MMRN1Q13201 1228 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 STAT4Q14765 748 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 TXNRD3NBQ6F5E7 133 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 C16orf46Q6P387 395 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 HHIPL2Q6UWX4 724 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 POLNQ7Z5Q5 900 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 PIGWQ7Z7B1 504 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 ECHDC2Q86YB7 292 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 OR5B17Q8NGF7 314 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 PLEKHO2Q8TD55 490 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 LENG9Q96B70 501 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 NAF1Q96HR8 494 aaKnown RBP11.23□□□□□ -0.61
CHD3-208ENST00000470531 APOL2Q9BQE5 337 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 COL20A1Q9P218 1284 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 SLC17A7Q9P2U7 560 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 NKX1-2Q9UD57 310 aaPredicted RBP11.23□□□□□ -0.61
CHD3-208ENST00000470531 COMMD10Q9Y6G5 202 aa11.23□□□□□ -0.61
CHD3-208ENST00000470531 CNTNAP4Q9C0A0 1308 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 BCORQ6W2J9 1755 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 PSAPP07602 524 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 FOXN2P32314 431 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 COG7P83436 770 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 MTA1Q13330 715 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 SLC1A5Q15758 541 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 GLRA4Q5JXX5 417 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 RNF135Q8IUD6 432 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 TRIM42Q8IWZ5 723 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 GJD4Q96KN9 370 aaPredicted RBP11.22□□□□□ -0.61
CHD3-208ENST00000470531 SERPINB12Q96P63 405 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 PAFAH2Q99487 392 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 TRIM56Q9BRZ2 755 aaKnown RBP11.22□□□□□ -0.61
CHD3-208ENST00000470531 TBC1D10AQ9BXI6 508 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 ZNF395Q9H8N7 513 aaPredicted RBP11.22□□□□□ -0.61
CHD3-208ENST00000470531 EBF2Q9HAK2 575 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 JPH1Q9HDC5 661 aaPredicted RBP11.22□□□□□ -0.61
CHD3-208ENST00000470531 ZDHHC18Q9NUE0 388 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 PARVAQ9NVD7 372 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 DYTNA2CJ06 578 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 GOLGA8TH3BQL2 631 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 MAFGO15525 162 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 KRT36O76013 467 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 PDE5AO76074 875 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 MT-CO1P00395 513 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 CETPP11597 493 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 ETS2P15036 469 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 ATP6V1B1P15313 513 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 CCND1P24385 295 aa11.22□□□□□ -0.61
CHD3-208ENST00000470531 KPNB1Q14974 876 aaKnown RBP11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms