RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SP5Q6BEB4 398 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 CXorf57Q6NSI4 855 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 Q6ZVL8 140 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 ZNF572Q7Z3I7 529 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 GPR149Q86SP6 731 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 ZBTB46Q86UZ6 589 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 CMIPQ8IY22 773 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 SAMD14Q8IZD0 417 aaPredicted RBP5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 GPR156Q8NFN8 814 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 TSPEARQ8WU66 669 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 RAX2Q96IS3 184 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 Q96MF0 132 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 TTC1Q99614 292 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 MRI1Q9BV20 369 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 REXO4Q9GZR2 422 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 LDAHQ9H6V9 325 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 DMRT3Q9NQL9 472 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 TLK1Q9UKI8 766 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 MAPRE3Q9UPY8 281 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 LUC7L2Q9Y383 392 aaKnown RBP5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 TTLL3Q9Y4R7 772 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 AATKQ6ZMQ8 1374 aa5.54□□□□□ -1.52
CCDC88A-210ENST00000468534 TOR1BO14657 336 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 TMCC2O75069 709 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 ABLIM3O94929 683 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 SETSIPP0DME0 302 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 GYS1P13807 737 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 ALOX15P16050 662 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 MPLP40238 635 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 CCT5P48643 541 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 COPAP53621 1224 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 BPIFB3P59826 476 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 KRT83P78385 493 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 OCA2Q04671 838 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 DHCR24Q15392 516 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 HSP90B2PQ58FF3 399 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 B3GNTL1Q67FW5 361 aaPredicted RBP5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 SWSAP1Q6NVH7 229 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 ZNF449Q6P9G9 518 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 C1orf228Q6PIY5 440 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 CCDC129Q6ZRS4 1044 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 NECAB2Q7Z6G3 386 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 DAAM2Q86T65 1068 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 PQLC1Q8N2U9 271 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 TMEM132CQ8N3T6 1108 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 TEX9Q8N6V9 391 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 ACRBPQ8NEB7 543 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 WDR66Q8TBY9 1149 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 AUTS2Q8WXX7 1259 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 SH3KBP1Q96B97 665 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 VMP1Q96GC9 406 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 FUBP3Q96I24 572 aaKnown RBP eCLIP5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 ABCG4Q9H172 646 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 DHX36Q9H2U1 1008 aaKnown RBP5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 BCO1Q9HAY6 547 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 PRDM4Q9UKN5 801 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 RABL2BQ9UNT1 228 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 SNX5Q9Y5X3 404 aa5.53□□□□□ -1.52
CCDC88A-210ENST00000468534 COL11A2P13942 1736 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 A0A1B0GTW7 788 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 GOLGA8AA7E2F4 631 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 EYA4O95677 639 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 ATP5JP18859 108 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 KIF5BP33176 963 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 SCAPQ12770 1279 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 TRIM29Q14134 588 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 ADRM1Q16186 407 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 COLEC12Q5KU26 742 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 ARMC6Q6NXE6 501 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 PLBD1Q6P4A8 553 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 CAGE1Q8TC20 777 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 HVCN1Q96D96 273 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 MTMR8Q96EF0 704 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 PPM1MQ96MI6 270 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 EIF2AK1Q9BQI3 630 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 SPATA5L1Q9BVQ7 753 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 ACE2Q9BYF1 805 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 SENP6Q9GZR1 1112 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 PNMA8BQ9ULN7 279 aaPredicted RBP5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 PHTF1Q9UMS5 762 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 APOBEC2Q9Y235 224 aaKnown RBP5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 PCDHGB3Q9Y5G1 929 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 IKBKGQ9Y6K9 419 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 ATRNL1Q5VV63 1379 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 PHLDB1Q86UU1 1377 aa5.52□□□□□ -1.53
CCDC88A-210ENST00000468534 MAST3O60307 1309 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 ABHD14A-ACY1A0A1B0GW23 586 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 CCDC78A2IDD5 438 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 INMTO95050 263 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 POMCP01189 267 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 CCDC159P0C7I6 412 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 CAPN3P20807 821 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 FGFR4P22455 802 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 SLC6A2P23975 617 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 SREBF1P36956 1147 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 RAD52P43351 418 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 ALDH1A3P47895 512 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 SCAND1P57086 179 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 CXADRP78310 365 aa5.51□□□□□ -1.53
CCDC88A-210ENST00000468534 HSD11B2P80365 405 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms