RNA–Protein interactions for RNA: ENST00000466411.1

CLDN4-204, Transcript of claudin 4, humanhuman

TSL 4

Gene CLDN4, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-204ENST00000466411 RNF169Q8NCN4 708 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 CACTINQ8WUQ7 758 aaKnown RBP7.5□□□□□ -1.21
CLDN4-204ENST00000466411 SCFD1Q8WVM8 642 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 ZCCHC14Q8WYQ9 949 aaKnown RBP7.5□□□□□ -1.21
CLDN4-204ENST00000466411 CLDN23Q96B33 292 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 ANP32EQ9BTT0 268 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 MKNK1Q9BUB5 465 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 OSBPL6Q9BZF3 934 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 NAT10Q9H0A0 1025 aaKnown RBP7.5□□□□□ -1.21
CLDN4-204ENST00000466411 CDT1Q9H211 546 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 RPF1Q9H9Y2 349 aaKnown RBP7.5□□□□□ -1.21
CLDN4-204ENST00000466411 SLC39A2Q9NP94 309 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 SPATA6Q9NWH7 488 aaPredicted RBP7.5□□□□□ -1.21
CLDN4-204ENST00000466411 CNTN3Q9P232 1028 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 PUF60Q9UHX1 559 aaKnown RBP7.5□□□□□ -1.21
CLDN4-204ENST00000466411 TRAF3IP3Q9Y228 551 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 SSX2IPQ9Y2D8 614 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 PCDHA5Q9Y5H7 936 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 KALRNO60229 2985 aa7.5□□□□□ -1.21
CLDN4-204ENST00000466411 KANSL1LA0AUZ9 987 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ZNF233A6NK53 670 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 SHISA7A6NL88 538 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 TBKBP1A7MCY6 615 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 GIPC1O14908 333 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 SLC16A3O15427 465 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 RECQL4O94761 1208 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 F12P00748 615 aaPredicted RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 MYBP10242 640 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 EPCAMP16422 314 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 RPL9P32969 192 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 PNPLA4P41247 253 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 FKBP3Q00688 224 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 STK4Q13043 487 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 TUSC3Q13454 348 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 SNRNP35Q16560 246 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ZC2HC1CQ53FD0 456 aaPredicted RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 XKR4Q5GH76 650 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 SPOUT1Q5T280 376 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 IL31Q6EBC2 164 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ELMSAN1Q6PJG2 1045 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 SASS6Q6UVJ0 657 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 TMC5Q6UXY8 1006 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 LRRC55Q6ZSA7 311 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 INTS8Q75QN2 995 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 THNSL1Q8IYQ7 743 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 GRAMD1CQ8IYS0 662 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 KIAA0895Q8NCT3 520 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 SMG8Q8ND04 991 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 HELQQ8TDG4 1101 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ZNF516Q92618 1163 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 NXPE3Q969Y0 559 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ZNF558Q96NG5 402 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 CASD1Q96PB1 797 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 OXCT2Q9BYC2 517 aaPredicted RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 FAM126AQ9BYI3 521 aaPredicted RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 DNAI2Q9GZS0 605 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 NXF3Q9H4D5 531 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 AGPAT3Q9NRZ7 376 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 EPS15L1Q9UBC2 864 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 PARP2Q9UGN5 583 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 CPSF3Q9UKF6 684 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 UBQLN1Q9UMX0 589 aaKnown RBP7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ANK1P16157 1881 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 ACACAQ13085 2346 aa7.49□□□□□ -1.21
CLDN4-204ENST00000466411 TEP1Q99973 2627 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 SPAG17Q6Q759 2223 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 SHROOM3Q8TF72 1996 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 ANHXE9PGG2 379 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 TMEM189-UBE2V1I3L0A0 370 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 ABLIM1O14639 778 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 IKBKBO14920 756 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 CETN3O15182 167 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 EXOC3O60645 756 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 OFD1O75665 1012 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 C1QL1O75973 258 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 DXOO77932 396 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 PRPF6O94906 941 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 ADH1BP00325 375 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 C1RP00736 705 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 ALDH2P05091 517 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 ADRB2P07550 413 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 EPB41P11171 864 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 KRT13P13646 458 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 TRIM21P19474 475 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 ERCC5P28715 1186 aaPredicted RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 PSMC2P35998 433 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 MLH1P40692 756 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 CASP5P51878 434 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 PAK1Q13153 545 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 MORC3Q14149 939 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 PTPN14Q15678 1187 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 PTPRNQ16849 979 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 CLLU1OSQ5K130 101 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 AGMOQ6ZNB7 445 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 RBM43Q6ZSC3 357 aaKnown RBP7.48□□□□□ -1.21
CLDN4-204ENST00000466411 CCDC149Q6ZUS6 474 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 WDR49Q8IV35 697 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 FAM114A1Q8IWE2 563 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 BRSK2Q8IWQ3 736 aa7.48□□□□□ -1.21
CLDN4-204ENST00000466411 GLIS3Q8NEA6 775 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms