RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 TUFMP49411 452 aaKnown RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 TSPY1Q01534 308 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 DUSP4Q13115 394 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 STIM1Q13586 685 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 SOWAHAQ2M3V2 549 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 PABPC1LQ4VXU2 614 aaKnown RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 SLC39A12Q504Y0 691 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 IQCEQ6IPM2 695 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 CLEC17AQ6ZS10 378 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 INTS8Q75QN2 995 aaKnown RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 LIMS2Q7Z4I7 341 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 PLEKHO2Q8TD55 490 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 EDAQ92838 391 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 ERCC4Q92889 916 aaPredicted RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 SYAP1Q96A49 352 aaPredicted RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 PGLYRP2Q96PD5 576 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 TMEM209Q96SK2 561 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 TSG101Q99816 390 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 DDX43Q9NXZ2 648 aaKnown RBP13.99□□□□□ -0.17
COL28A1-206ENST00000465339 IGSF9Q9P2J2 1179 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 EPS15L1Q9UBC2 864 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 SORCS3Q9UPU3 1222 aa13.99□□□□□ -0.17
COL28A1-206ENST00000465339 MUC3AQ02505 3323 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 ZNF197O14709 1029 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 CETN3O15182 167 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 N4BP1O75113 896 aaKnown RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 VNN2O95498 520 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 C4BPAP04003 597 aaKnown RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 KRT13P13646 458 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 PCSK1P29120 753 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 VAMP7P51809 220 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 EPHB3P54753 998 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 MCCD1P59942 119 aaPredicted RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 DLG4P78352 724 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 NTHL1P78549 312 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 ZXDAP98168 799 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 TWF1Q12792 350 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 BIRC3Q13489 604 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 NFE2Q16621 373 aaPredicted RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 WDR72Q3MJ13 1102 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 GET4Q7L5D6 327 aaPredicted RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 FAM186BQ8IYM0 893 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 ADGRF2Q8IZF7 708 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 ADSSL1Q8N142 457 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 ATAD1Q8NBU5 361 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 LEMD2Q8NC56 503 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 SPPL2BQ8TCT7 592 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 NXPE3Q969Y0 559 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 DHTKD1Q96HY7 919 aaPredicted RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 IPO9Q96P70 1041 aaKnown RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 MYADMQ96S97 322 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 MMS19Q96T76 1030 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 MKNK1Q9BUB5 465 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 HCFC1R1Q9NWW0 138 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 MAN1B1Q9UKM7 699 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 MRPS23Q9Y3D9 190 aaKnown RBP13.98□□□□□ -0.17
COL28A1-206ENST00000465339 ASB3Q9Y575 518 aa13.98□□□□□ -0.17
COL28A1-206ENST00000465339 PSMA7O14818 248 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 TACC1O75410 805 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 AKAP3O75969 853 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 MICAL2O94851 1124 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 RHOP08100 348 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 MYL6P60660 151 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 TNNC1P63316 161 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 FKBP3Q00688 224 aaKnown RBP13.97□□□□□ -0.17
COL28A1-206ENST00000465339 LRRC63Q05C16 580 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 SGSM1Q2NKQ1 1148 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 ZACNQ401N2 412 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 TMEM31Q5JXX7 168 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 CYP4A22Q5TCH4 519 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 TDRD10Q5VZ19 366 aaKnown RBP13.97□□□□□ -0.17
COL28A1-206ENST00000465339 LRRTM3Q86VH5 581 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 UBALD2Q8IYN6 164 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 TAF4BQ92750 862 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 CORO1BQ9BR76 489 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 XYLT2Q9H1B5 865 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 CRISPLD1Q9H336 500 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 VRTNQ9H8Y1 702 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 KCNK12Q9HB15 430 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 CEP72Q9P209 647 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 CDH7Q9ULB5 785 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 SLC27A5Q9Y2P5 690 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 YIPF1Q9Y548 306 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 PCDHB5Q9Y5E4 795 aa13.97□□□□□ -0.17
COL28A1-206ENST00000465339 ASGR2P07307 311 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 EPB41P11171 864 aaKnown RBP13.96□□□□□ -0.17
COL28A1-206ENST00000465339 WARSP23381 471 aaKnown RBP13.96□□□□□ -0.17
COL28A1-206ENST00000465339 CCNE1P24864 410 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 TDGQ13569 410 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 MTMR3Q13615 1198 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 NCOA4Q13772 614 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 MORC3Q14149 939 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 INTS6LQ5JSJ4 861 aaKnown RBP13.96□□□□□ -0.17
COL28A1-206ENST00000465339 ANKRD40Q6AI12 368 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 ISM2Q6H9L7 571 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 TRIM67Q6ZTA4 783 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 PDZD4Q76G19 769 aaPredicted RBP13.96□□□□□ -0.17
COL28A1-206ENST00000465339 SV2AQ7L0J3 742 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 ITIH5Q86UX2 942 aa13.96□□□□□ -0.17
COL28A1-206ENST00000465339 OSTM1Q86WC4 334 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms