RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 CILPO75339 1184 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 TRIM21P19474 475 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ACO1P21399 889 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 PCSK1P29120 753 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ZNF75DP51815 510 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 PSMD5Q16401 504 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 PTPROQ16827 1216 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ZNF697Q5TEC3 545 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 IQCEQ6IPM2 695 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 SLC8B1Q6J4K2 584 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 GJB7Q6PEY0 223 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 OSTM1Q86WC4 334 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 VSTM4Q8IW00 320 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 SHC3Q92529 594 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 KAT5Q92993 513 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 RTP3Q9BQQ7 232 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 STK33Q9BYT3 514 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 TTYH3Q9C0H2 523 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 SNX25Q9H3E2 840 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 ENTPD7Q9NQZ7 604 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 DDX43Q9NXZ2 648 aaKnown RBP12.37□□□□□ -0.43
SCN9A-204ENST00000452182 LMCD1Q9NZU5 365 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 CEP72Q9P209 647 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 FHOD1Q9Y613 1164 aa12.37□□□□□ -0.43
SCN9A-204ENST00000452182 A0A1W2PQJ5 194 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 A8MXQ7 604 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 C1RP00736 705 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 RAP1GAPP47736 663 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 POLR2FP61218 127 aaKnown RBP12.36□□□□□ -0.43
SCN9A-204ENST00000452182 CTXN3Q4LDR2 81 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 SPECC1LQ69YQ0 1117 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 PRSS55Q6UWB4 352 aaPredicted RBP12.36□□□□□ -0.43
SCN9A-204ENST00000452182 CRYBG2Q8N1P7 616 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 OR6B3Q8NGW1 331 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 WHAMMQ8TF30 809 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 GDPD5Q8WTR4 605 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 MRPL38Q96DV4 380 aaKnown RBP12.36□□□□□ -0.43
SCN9A-204ENST00000452182 LRCH3Q96II8 777 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 TNIP3Q96KP6 325 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 DNAI2Q9GZS0 605 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 CDH9Q9ULB4 789 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 MYO6Q9UM54 1294 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 NME7Q9Y5B8 376 aa12.36□□□□□ -0.43
SCN9A-204ENST00000452182 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.36□□□□□ -0.434e-6■■■□□ 17.6
SCN9A-204ENST00000452182 C2orf71A6NGG8 1288 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 C2CD2LO14523 706 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 CXCL14O95715 111 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 CD58P19256 250 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 POU3F3P20264 500 aaPredicted RBP12.35□□□□□ -0.43
SCN9A-204ENST00000452182 LMO2P25791 158 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 NDUFV1P49821 464 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 MRE11P49959 708 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 NDST1P52848 882 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 JAM2P57087 298 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 TRIM14Q14142 442 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 PTPN21Q16825 1174 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 INTS6LQ5JSJ4 861 aaKnown RBP12.35□□□□□ -0.43
SCN9A-204ENST00000452182 OR10T2Q8NGX3 314 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 MICAL1Q8TDZ2 1067 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 CLSTN3Q9BQT9 956 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 NT5C1AQ9BXI3 368 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 EMILIN2Q9BXX0 1053 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 GPR88Q9GZN0 384 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 ZCWPW1Q9H0M4 648 aa12.35□□□□□ -0.43
SCN9A-204ENST00000452182 AJAP1Q9UKB5 411 aaPredicted RBP12.35□□□□□ -0.43
SCN9A-204ENST00000452182 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.34□□□□□ -0.43
SCN9A-204ENST00000452182 TEX28O15482 410 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 CNPP09543 421 aaKnown RBP12.34□□□□□ -0.43
SCN9A-204ENST00000452182 IRS1P35568 1242 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 ZNF132P52740 706 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 TSPY1Q01534 308 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 SMARCB1Q12824 385 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 RAPGEF1Q13905 1077 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 DRAP1Q14919 205 aaPredicted RBP12.34□□□□□ -0.43
SCN9A-204ENST00000452182 GRIN2CQ14957 1233 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 ARHGAP44Q17R89 818 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 FAM171BQ6P995 826 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 TMEM270Q6UE05 265 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 RSPO2Q6UXX9 243 aaPredicted RBP12.34□□□□□ -0.43
SCN9A-204ENST00000452182 CACNA2D4Q7Z3S7 1137 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 FMNL3Q8IVF7 1028 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 FAM71AQ8IYT1 594 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 AUTS2Q8WXX7 1259 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 TMEM176AQ96HP8 235 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 PKMYT1Q99640 499 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 PRDM12Q9H4Q4 367 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 HMGXB4Q9UGU5 601 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 KIAA1257Q9ULG3 409 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 CDY1Q9Y6F8 540 aa12.34□□□□□ -0.43
SCN9A-204ENST00000452182 HIDE1A8MVS5 230 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 F8VZ95 297 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 RFXAPO00287 272 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 FOXN3O00409 490 aaPredicted RBP12.33□□□□□ -0.43
SCN9A-204ENST00000452182 ADCY5O95622 1261 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 ADH1AP07327 375 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 PAEPP09466 180 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 CDC25BP30305 580 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 RAD23BP54727 409 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 GPR17Q13304 367 aa12.33□□□□□ -0.43
SCN9A-204ENST00000452182 RAB33AQ14088 237 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms