RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZSWIM3Q96MP5 696 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ZNF396Q96N95 335 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 FIZ1Q96SL8 496 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ACBD6Q9BR61 282 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 PYM1Q9BRP8 204 aaKnown RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 STRA6Q9BX79 667 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ZCWPW1Q9H0M4 648 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 CHRDQ9H2X0 955 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ATXN3LQ9H3M9 355 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 TASP1Q9H6P5 420 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 LMAN1LQ9HAT1 526 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 ABCB6Q9NP58 842 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 EHD2Q9NZN4 543 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 NCDNQ9UBB6 729 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 UXTQ9UBK9 157 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 FBXO2Q9UK22 296 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 ITGA11Q9UKX5 1188 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 SLC27A5Q9Y2P5 690 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 PCDHB5Q9Y5E4 795 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 CLIC4Q9Y696 253 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 PIAS3Q9Y6X2 628 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 R4GN57 208 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 KIF26AQ9ULI4 1882 aaPredicted RBP7.63□□□□□ -1.19
VPS41-208ENST00000448833 DMDP11532 3685 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 TSC2P49815 1807 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 F5P12259 2224 aa7.63□□□□□ -1.19
VPS41-208ENST00000448833 STX6O43752 255 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 EXTL3O43909 919 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 PPP6R2O75170 966 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 MOSPD3O75425 235 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 PPP1R37O75864 691 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 OR4Q2P0C623 313 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 CSH1P0DML2 217 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 CSH2P0DML3 217 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 TARSP26639 723 aaKnown RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 GABRR2P28476 465 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 PCSK1P29120 753 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 AVPR1AP37288 418 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 VIPR2P41587 438 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 CXCL12P48061 93 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 LHX1P48742 406 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 PDE6CP51160 858 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 RBP5P82980 135 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 TFAMQ00059 246 aaKnown RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 MYL7Q01449 175 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 GRIN1Q05586 938 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 GRM2Q14416 872 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 PUM1Q14671 1186 aaKnown RBP eCLIP7.62□□□□□ -1.19
VPS41-208ENST00000448833 STK38Q15208 465 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 MAPRE1Q15691 268 aaKnown RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 GPR158Q5T848 1215 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 SLC39A4Q6P5W5 647 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 CRELD2Q6UXH1 353 aaPredicted RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 MAML2Q8IZL2 1156 aaPredicted RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 SPEM1Q8N4L4 309 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 FSIP1Q8NA03 581 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 IQUBQ8NA54 791 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 ATAD1Q8NBU5 361 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 CCDC26Q8TAB7 109 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 BPIFB1Q8TDL5 484 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 NELL1Q92832 810 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 DNAJC19Q96DA6 116 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 CEP295NLQ96MC4 621 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 SEPT5Q99719 369 aaPredicted RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 FAM213AQ9BRX8 229 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 LRRC3Q9BY71 257 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 EPC1Q9H2F5 836 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 TNMDQ9H2S6 317 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 KIF9Q9HAQ2 790 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 PRMT8Q9NR22 394 aaPredicted RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 PANK4Q9NVE7 773 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 GDAP2Q9NXN4 497 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 RBAKQ9NYW8 714 aaPredicted RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 NDRG2Q9UN36 371 aaKnown RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 MTF2Q9Y483 593 aaPredicted RBP7.62□□□□□ -1.19
VPS41-208ENST00000448833 OBSL1O75147 1896 aa7.62□□□□□ -1.19
VPS41-208ENST00000448833 GREB1Q4ZG55 1949 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 FRMD3A2A2Y4 597 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 MYMKA6NI61 221 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ZNF233A6NK53 670 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 PRR5-ARHGAP8B1AHC4 643 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 LILRB5O75023 590 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ATG13O75143 517 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 LRRN2O75325 713 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 PRPF40AO75400 957 aaKnown RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 TNNC2P02585 160 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 FAM163BP0C2L3 166 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 TMEM191BP0C7N4 346 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 HAPLN1P10915 354 aaPredicted RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 GJA1P17302 382 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 CCNE1P24864 410 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ADSSP30520 456 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 GUCY2FP51841 1108 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 ARHGAP8P85298 464 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 CEBPZQ03701 1054 aaKnown RBP7.61□□□□□ -1.19
VPS41-208ENST00000448833 BFSP1Q12934 665 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 MTAPQ13126 283 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 RESTQ13127 1097 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 FZD5Q13467 585 aa7.61□□□□□ -1.19
VPS41-208ENST00000448833 DUOXA2Q1HG44 320 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms