RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 TBX10O75333 385 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 CAVIN2O95810 425 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 ADH1AP07327 375 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 ATP1A3P13637 1013 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 KLRC2P26717 231 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 MTIF2P46199 727 aaKnown RBP13.3□□□□□ -0.28
USP40-205ENST00000430158 CDH8P55286 799 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 INCA1Q0VD86 236 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 GPR17Q13304 367 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 VWA3BQ502W6 1294 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 FAM171BQ6P995 826 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 SYCE2Q6PIF2 218 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 LRSAM1Q6UWE0 723 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 PPFIBP1Q86W92 1011 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 PALB2Q86YC2 1186 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 ADGRF2Q8IZF7 708 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 MICALL1Q8N3F8 863 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 ZNF461Q8TAF7 563 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 WHAMMQ8TF30 809 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 PPP2R3CQ969Q6 453 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 MSLNLQ96KJ4 702 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 ACBD6Q9BR61 282 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 OXCT2Q9BYC2 517 aaPredicted RBP13.3□□□□□ -0.28
USP40-205ENST00000430158 NIF3L1Q9GZT8 377 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 NDST4Q9H3R1 872 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 IGFLR1Q9H665 355 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 PRDM6Q9NQX0 595 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.3□□□□□ -0.28
USP40-205ENST00000430158 TMLHEQ9NVH6 421 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 NXF1Q9UBU9 619 aaKnown RBP13.3□□□□□ -0.28
USP40-205ENST00000430158 FBXW11Q9UKB1 542 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 C2orf16Q68DN1 1984 aa13.3□□□□□ -0.28
USP40-205ENST00000430158 SEC24AO95486 1093 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 OR4Q2P0C623 313 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 RAP1GAPP47736 663 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 LHX1P48742 406 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 KCNMA1Q12791 1236 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 CCDC142Q17RM4 750 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 LUZP1Q86V48 1076 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 METTL23Q86XA0 190 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 GLYCTKQ8IVS8 523 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 HDAC7Q8WUI4 952 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 MMS19Q96T76 1030 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 ARID3AQ99856 593 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 S1PR5Q9H228 398 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 CRISPLD1Q9H336 500 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 CYP3A43Q9HB55 503 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 SIX2Q9NPC8 291 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 CRTAC1Q9NQ79 661 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 DDX43Q9NXZ2 648 aaKnown RBP13.29□□□□□ -0.28
USP40-205ENST00000430158 TAB2Q9NYJ8 693 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 R3HCC1Q9Y3T6 440 aaKnown RBP13.29□□□□□ -0.28
USP40-205ENST00000430158 XIRP2A4UGR9 3374 aa13.29□□□□□ -0.28
USP40-205ENST00000430158 DOCK8Q8NF50 2099 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 FSD2A1L4K1 749 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 SMTNL1A8MU46 457 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 ATP2C2O75185 946 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 GLUD1P00367 558 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 WEE2P0C1S8 567 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 SPATA31D3P0C874 917 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 ATF2P15336 505 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 SLC9A1P19634 815 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 ACO1P21399 889 aaKnown RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 ACAT1P24752 427 aaKnown RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 PON1P27169 355 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 GNL1P36915 607 aaPredicted RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 COPB1P53618 953 aaKnown RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 TNNC1P63316 161 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 APBA1Q02410 837 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 INTS6LQ5JSJ4 861 aaKnown RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 TPGS2Q68CL5 300 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 PHLDB3Q6NSJ2 640 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 ANKRD54Q6NXT1 300 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 LLGL2Q6P1M3 1020 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 RNF19BQ6ZMZ0 732 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 SPATA31D4Q6ZUB0 917 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 ARHGEF19Q8IW93 802 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 TCEAL8Q8IYN2 117 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 KREMEN2Q8NCW0 462 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 FAM200AQ8TCP9 573 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 PPM1EQ8WY54 764 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 KAT5Q92993 513 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 KREMEN1Q96MU8 473 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 TWNKQ96RR1 684 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 LPIN3Q9BQK8 851 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 CRACR2AQ9BSW2 395 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 INTS2Q9H0H0 1204 aaKnown RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 UBE2ZQ9H832 354 aaPredicted RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 MAGEC2Q9UBF1 373 aaPredicted RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 HMGXB4Q9UGU5 601 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 AFF4Q9UHB7 1163 aaKnown RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 MAFFQ9ULX9 164 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 BARX2Q9UMQ3 279 aaPredicted RBP13.28□□□□□ -0.28
USP40-205ENST00000430158 BOLA1Q9Y3E2 137 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 GREB1Q4ZG55 1949 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 C5orf42Q9H799 3197 aa13.28□□□□□ -0.28
USP40-205ENST00000430158 MYBPHLA2RUH7 354 aa13.27□□□□□ -0.29
USP40-205ENST00000430158 MTMR11A4FU01 709 aa13.27□□□□□ -0.29
USP40-205ENST00000430158 CILPO75339 1184 aa13.27□□□□□ -0.29
USP40-205ENST00000430158 PRKCSHP14314 528 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms