RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 C2CD4DB7Z1M9 353 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 LOC730098B7Z3J9 87 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 STX10O60499 249 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 SOAT2O75908 522 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 STAU1O95793 577 aaKnown RBP19.98■□□□□ 0.79
SHH-202ENST00000430104 LMO2P25791 158 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 RAP1GAPP47736 663 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 CDH8P55286 799 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 ENPEPQ07075 957 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 RTL10Q7L3V2 364 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 MLKLQ8NB16 471 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 TAS1R2Q8TE23 839 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 SEPT5Q99719 369 aaPredicted RBP19.98■□□□□ 0.79
SHH-202ENST00000430104 ACBD6Q9BR61 282 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 SRRTQ9BXP5 876 aaKnown RBP19.98■□□□□ 0.79
SHH-202ENST00000430104 SMYD3Q9H7B4 428 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 TMEM8AQ9HCN3 771 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 DNMT3BQ9UBC3 853 aaKnown RBP19.98■□□□□ 0.79
SHH-202ENST00000430104 GTF3C4Q9UKN8 822 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 MAFFQ9ULX9 164 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 YIPF1Q9Y548 306 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 C5orf42Q9H799 3197 aa19.98■□□□□ 0.79
SHH-202ENST00000430104 GABRDO14764 452 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 ATP2C2O75185 946 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 MBD3O95983 291 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 WARSP23381 471 aaKnown RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 PCSK1P29120 753 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 GBP2P32456 591 aaPredicted RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 GNL1P36915 607 aaPredicted RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 MXI1P50539 228 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 NLRP12P59046 1061 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 PSMC1P62191 440 aaKnown RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 CCDC142Q17RM4 750 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 MGAT5BQ3V5L5 792 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 INTS6LQ5JSJ4 861 aaKnown RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 KRT39Q6A163 491 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 GET4Q7L5D6 327 aaPredicted RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 LIMS2Q7Z4I7 341 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 CREBRFQ8IUR6 639 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 ELMOD1Q8N336 334 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 TDRD5Q8NAT2 981 aaKnown RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 SPATA18Q8TC71 538 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 SYT15Q9BQS2 421 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 CORO1BQ9BR76 489 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 RHOBTB2Q9BYZ6 727 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 IMPG2Q9BZV3 1241 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 METTL14Q9HCE5 456 aaKnown RBP19.97■□□□□ 0.79
SHH-202ENST00000430104 RWDD2AQ9UIY3 292 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 PCDHB5Q9Y5E4 795 aa19.97■□□□□ 0.79
SHH-202ENST00000430104 LRRN2O75325 713 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 PAPLNO95428 1278 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 PTPN2P17706 415 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 FSHRP23945 695 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 GTF2H1P32780 548 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 ALDH1A3P47895 512 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 DPCR1Q3MIW9 517 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 FRMD5Q7Z6J6 570 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 FAM200AQ8TCP9 573 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 TAF4BQ92750 862 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 ACSF2Q96CM8 615 aaPredicted RBP19.96■□□□□ 0.79
SHH-202ENST00000430104 ZNF512Q96ME7 567 aaPredicted RBP19.96■□□□□ 0.79
SHH-202ENST00000430104 VRTNQ9H8Y1 702 aa19.96■□□□□ 0.79
SHH-202ENST00000430104 NOTCH4Q99466 2003 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 MYBPHLA2RUH7 354 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 A8MXQ7 604 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 TACC1O75410 805 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 ASS1P00966 412 aaKnown RBP19.95■□□□□ 0.78
SHH-202ENST00000430104 P4HA1P13674 534 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 EPHB3P54753 998 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 TPD52L1Q16890 204 aaPredicted RBP19.95■□□□□ 0.78
SHH-202ENST00000430104 CBWD6Q4V339 395 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 PABPC1LQ4VXU2 614 aaKnown RBP19.95■□□□□ 0.78
SHH-202ENST00000430104 CBWD3Q5JTY5 395 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 CBWD5Q5RIA9 395 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 IQCEQ6IPM2 695 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 OTOP3Q7RTS5 596 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 RNF135Q8IUD6 432 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 HS6ST3Q8IZP7 471 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 CCDC150Q8NCX0 1101 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 SPPL2BQ8TCT7 592 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 SEMA4DQ92854 862 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 KHSRPQ92945 711 aaKnown RBP eCLIP19.95■□□□□ 0.78
SHH-202ENST00000430104 LPIN3Q9BQK8 851 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 SDCBP2Q9H190 292 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 CEP72Q9P209 647 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 CDH9Q9ULB4 789 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 NME7Q9Y5B8 376 aa19.95■□□□□ 0.78
SHH-202ENST00000430104 FGFR1OPO95684 399 aaKnown RBP19.94■□□□□ 0.78
SHH-202ENST00000430104 RHOP08100 348 aa19.94■□□□□ 0.78
SHH-202ENST00000430104 TUFMP49411 452 aaKnown RBP19.94■□□□□ 0.78
SHH-202ENST00000430104 MCCD1P59942 119 aaPredicted RBP19.94■□□□□ 0.78
SHH-202ENST00000430104 NOP14P78316 857 aaKnown RBP19.94■□□□□ 0.78
SHH-202ENST00000430104 SMARCB1Q12824 385 aa19.94■□□□□ 0.78
SHH-202ENST00000430104 PLD1Q13393 1074 aa19.94■□□□□ 0.78
SHH-202ENST00000430104 NFE2Q16621 373 aaPredicted RBP19.94■□□□□ 0.78
SHH-202ENST00000430104 FOXR2Q6PJQ5 311 aa19.94■□□□□ 0.78
SHH-202ENST00000430104 SPATA2LQ8IUW3 424 aaPredicted RBP19.94■□□□□ 0.78
SHH-202ENST00000430104 FBXL13Q8NEE6 735 aa19.94■□□□□ 0.78
SHH-202ENST00000430104 GIPC2Q8TF65 315 aa19.94■□□□□ 0.78
SHH-202ENST00000430104 C2orf15Q8WU43 125 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms