RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 EIF4E1BA6NMX2 242 aaKnown RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 RNF103O00237 685 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 BIRC5O15392 142 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 AKAP10O43572 662 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 KLHL2O95198 593 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CTSHP09668 335 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CHRM3P20309 590 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 RPS12P25398 132 aaKnown RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CLK1P49759 484 aaKnown RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 STX5Q13190 355 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 SGCGQ13326 291 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 USP10Q14694 798 aaKnown RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CCL15Q16663 113 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 TTC39BQ5VTQ0 682 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 HIBCHQ6NVY1 386 aaPredicted RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 LINC00301Q8NCQ3 95 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 ATL2Q8NHH9 583 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 RNASE11Q8TAA1 199 aaKnown RBP7.15□□□□□ -1.27
SCN1A-204ENST00000423058 DDI1Q8WTU0 396 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CYFIP2Q96F07 1278 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 CYP4F11Q9HBI6 524 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 AHSPQ9NZD4 102 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 NAGPAQ9UK23 515 aa7.15□□□□□ -1.27
SCN1A-204ENST00000423058 LGALS16A8MUM7 142 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 RPL10AP62906 217 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CDC16Q13042 620 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 NCOA4Q13772 614 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GNA13Q14344 377 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GRM4Q14833 912 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ALFQ53S48 1182 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 HLA-DQA1Q5Y7H0 255 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TRAPPC11Q7Z392 1133 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 P3H2Q8IVL5 708 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GOLPH3Q9H4A6 298 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TASP1Q9H6P5 420 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TRPM5Q9NZQ8 1165 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GTF2A1LQ9UNN4 478 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SLC16A3O15427 465 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 MPOP05164 745 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 NCAM1P13591 858 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PAX3P23760 479 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 HMGCS2P54868 508 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ILF2Q12905 390 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CLEC16AQ2KHT3 1053 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 DPCR1Q3MIW9 517 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 DCAF6Q58WW2 860 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 STRIP1Q5VSL9 837 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 AGAP9Q5VTM2 703 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 XRRA1Q6P2D8 792 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CHSY1Q86X52 802 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 AGAP3Q96P47 875 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ABHD10Q9NUJ1 306 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CYP39A1Q9NYL5 469 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SNX9Q9Y5X1 595 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 BICRAQ9NZM4 1560 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PRKAB2O43741 272 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 STRNO43815 780 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 KIF1CO43896 1103 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 DNAL1Q4LDG9 190 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SLC45A4Q5BKX6 768 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 NAPEPLDQ6IQ20 393 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CHST13Q8NET6 341 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SPATA18Q8TC71 538 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 SH3GL1Q99961 368 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GINS4Q9BRT9 223 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 INTS2Q9H0H0 1204 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 VPS33BQ9H267 617 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TAF1DQ9H5J8 278 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ZFYVE1Q9HBF4 777 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM63CQ9P1W3 806 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 RRP15Q9Y3B9 282 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 A0A088AWK7 358 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 DYNC1LI2O43237 492 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ZNF10P21506 573 aaPredicted RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 HNMTP50135 292 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PPP2R2AP63151 447 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 IZUMO3Q5VZ72 239 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GLYCTKQ8IVS8 523 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM237Q96Q45 408 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TMEM47Q9BQJ4 181 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PUS7LQ9H0K6 701 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 WDCPQ9H6R7 721 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PCDHB6Q9Y5E3 794 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PTPRTO14522 1441 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ZCCHC11Q5TAX3 1644 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 POTEIP0CG38 1075 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 GRK4P32298 578 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 HSPA9P38646 679 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CYP24A1Q07973 514 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TTC23Q5W5X9 447 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 POTEGQ6S5H5 508 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 POTEEQ6S8J3 1075 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TMA16Q96EY4 203 aaKnown RBP7.14□□□□□ -1.27
SCN1A-204ENST00000423058 PAK5Q9P286 719 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TRPC5OSA6NMA1 111 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 TRIM13O60858 407 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 CACNB3P54284 484 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 RALGDSQ12967 914 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 ITGA9Q13797 1035 aa7.14□□□□□ -1.27
SCN1A-204ENST00000423058 EPHA7Q15375 998 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms