RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 MOB2Q70IA6 237 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 GPR155Q7Z3F1 870 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 TEX11Q8IYF3 940 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 PIK3C3Q8NEB9 887 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 PWWP2AQ96N64 755 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 WRNIP1Q96S55 665 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 SYNPO2Q9UMS6 1093 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 AKAP11Q9UKA4 1901 aa7.45□□□□□ -1.22
USP40-202ENST00000409945 LY86O95711 162 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 HLA-DOAP06340 250 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 ZNF888P0CJ79 500 aaPredicted RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 MTHFD2P13995 350 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 NFATC3Q12968 1075 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 ZBTB34Q8NCN2 500 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 PPP1R14CQ8TAE6 165 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 KAT5Q92993 513 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 SIGLEC10Q96LC7 697 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 AIFM3Q96NN9 605 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 NUP88Q99567 741 aaPredicted RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 DHX36Q9H2U1 1008 aaKnown RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 POLR3BQ9NW08 1133 aaPredicted RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 A0A0G2JNJ9 132 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 ERC2O15083 957 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 HSPA8P11142 646 aaKnown RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 PDCP20941 246 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 SLC5A3P53794 718 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 TOP3AQ13472 1001 aaPredicted RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 ARHGEF6Q15052 776 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 DGKDQ16760 1214 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 SYDE1Q6ZW31 735 aaPredicted RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 ERO1BQ86YB8 467 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 GRAMD1CQ8IYS0 662 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 MIER2Q8N344 545 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 TEPSINQ96N21 525 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 AATFQ9NY61 560 aaKnown RBP eCLIP7.44□□□□□ -1.22
USP40-202ENST00000409945 Q9UFV3 132 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 SAP30BPQ9UHR5 308 aaKnown RBP7.44□□□□□ -1.22
USP40-202ENST00000409945 IRAK3Q9Y616 596 aa7.44□□□□□ -1.22
USP40-202ENST00000409945 FFAR3O14843 346 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 ADCY6O43306 1168 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 TM4SF4P48230 202 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 ADAM15Q13444 863 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 VGLL4Q14135 290 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 ATAT1Q5SQI0 421 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 MAST2Q6P0Q8 1798 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 MIGA2Q7L4E1 593 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.43□□□□□ -1.22
USP40-202ENST00000409945 DIS3LQ8TF46 1054 aaKnown RBP7.43□□□□□ -1.22
USP40-202ENST00000409945 HPS3Q969F9 1004 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 GCC1Q96CN9 775 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 OPTNQ96CV9 577 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 HIST1H2AHQ96KK5 128 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 HIST1H2AJQ99878 128 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 RWDD1Q9H446 243 aaPredicted RBP7.43□□□□□ -1.22
USP40-202ENST00000409945 DCTPP1Q9H773 170 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 PAG1Q9NWQ8 432 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 RNF186Q9NXI6 227 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 SIK3Q9Y2K2 1263 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 PCDHA13Q9Y5I0 950 aa7.43□□□□□ -1.22
USP40-202ENST00000409945 H0Y858 1186 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 GOLIM4O00461 696 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 MAFO75444 373 aaPredicted RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 ALDH2P05091 517 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 C1QTNF9P0C862 333 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 CETPP11597 493 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 GSPT1P15170 499 aaKnown RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 ATP5JP18859 108 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 SLC6A9P48067 706 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 RRADP55042 308 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 PPATQ06203 517 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 SNAPC2Q13487 334 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 EIF4HQ15056 248 aaKnown RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 TBR1Q16650 682 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 GFOD2Q3B7J2 385 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 ZNF648Q5T619 568 aaPredicted RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 SLC9C2Q5TAH2 1124 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 ATG14Q6ZNE5 492 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 DGKHQ86XP1 1220 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 PRR18Q8N4B5 295 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 FBXO18Q8NFZ0 1043 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 HOXB13Q92826 284 aaPredicted RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 CRNKL1Q9BZJ0 848 aaKnown RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 ECHDC1Q9NTX5 307 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 PI4KBQ9UBF8 816 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 HERC5Q9UII4 1024 aaKnown RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 PCDHB1Q9Y5F3 818 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 AOX1Q06278 1338 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 A0A1W2PR48 441 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 LRRC14BA6NHZ5 514 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 CUTAO60888 179 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 CTSSP25774 331 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 USP14P54578 494 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 PPIL2Q13356 520 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 GTF2H3Q13889 308 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 MINDY4Q4G0A6 757 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 ZDHHC14Q8IZN3 488 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 CLMNQ96JQ2 1002 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 OSBPL5Q9H0X9 879 aaPredicted RBP7.42□□□□□ -1.22
USP40-202ENST00000409945 CSRNP2Q9H175 543 aa7.42□□□□□ -1.22
USP40-202ENST00000409945 BOLA2Q9H3K6 86 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms