RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DPP10Q8N608 796 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 RMND5AQ9H871 391 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 RBM12Q9NTZ6 932 aaKnown RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 SPATA31E1Q6ZUB1 1445 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 MFSD4BQ5TF39 518 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 TCAIMQ8N3R3 496 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 TP53INP1Q96A56 240 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 DCLK3Q9C098 648 aa13.42□□□□□ -0.26
COL6A3-206ENST00000409809 REXO4Q9GZR2 422 aaKnown RBP13.42□□□□□ -0.26
COL6A3-206ENST00000409809 RASA2Q15283 850 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 C6orf62Q9GZU0 229 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 COMMD8Q9NX08 183 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 TTC7AQ9ULT0 858 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 MYH1P12882 1939 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 MYH2Q9UKX2 1941 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 MYH4Q9Y623 1939 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 A0A1W2PRG6 482 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 PI4K2BG5E9Z4 385 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 KRT34O76011 436 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CD2BP2O95400 341 aaKnown RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 FTLP02792 175 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 ZAP70P43403 619 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 NECTIN1Q15223 517 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 ZNF667Q5HYK9 610 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CYP4Z1Q86W10 505 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CAMK1DQ8IU85 385 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 NFATC2IPQ8NCF5 419 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 OSBPL10Q9BXB5 764 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 GLRA3O75311 464 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 AP1G2O75843 785 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CRKP46108 304 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 TNFAIP8L3Q5GJ75 292 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 MZT2AQ6P582 158 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 EXOC3L1Q86VI1 746 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 APOL6Q9BWW8 343 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 RAD54BQ9Y620 910 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 EIF4E1BA6NMX2 242 aaKnown RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 MAGEA4P43358 317 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 HPCAP84074 193 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 ARID5BQ14865 1188 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 FAM98BQ52LJ0 330 aaKnown RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 PNPLA3Q9NST1 481 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 YWHABP31946 246 aaKnown RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 IL13P35225 146 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 PRCPP42785 496 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 SAMD4BQ5PRF9 694 aaKnown RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 MEI1Q5TIA1 1274 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 SEL1L3Q68CR1 1132 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 TBCKQ8TEA7 893 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 SUCLG2Q96I99 432 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 ASAP1Q9ULH1 1129 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 NCAPD2Q15021 1401 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 ABCA9Q8IUA7 1624 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CYP21A2P08686 494 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 TFAMQ00059 246 aaKnown RBP13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CCDC81Q6ZN84 652 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 GDPD5Q8WTR4 605 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 FAM167AQ96KS9 214 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 RSAD1Q9HA92 442 aa13.41□□□□□ -0.26
COL6A3-206ENST00000409809 CROCCQ5TZA2 2017 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PDXKO00764 312 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PABPC1P11940 636 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 LRPAP1P30533 357 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 MXD4Q14582 209 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 EID3Q8N140 333 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 NR1D2Q14995 579 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 LONRF1Q17RB8 773 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 TTC23LQ6PF05 361 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 KIFC1Q9BW19 673 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 XPO7Q9UIA9 1087 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 ATF6P18850 670 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 ANO4Q32M45 955 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 LIN54Q6MZP7 749 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 GPKOWQ92917 476 aaPredicted RBP eCLIP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 RPF1Q9H9Y2 349 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 AVENQ9NQS1 362 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PFDN2Q9UHV9 154 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PCDHB8Q9UN66 801 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 TAB3Q8N5C8 712 aaPredicted RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PHF11Q9UIL8 331 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 NSFL1CQ9UNZ2 370 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 MYH7BA7E2Y1 1941 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 FKBP9O95302 570 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 SLC45A4Q5BKX6 768 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PAPD7Q5XG87 772 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 FKBP9P1Q75LS8 142 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 HEATR4Q86WZ0 1026 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PZPP20742 1482 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 HECW2Q9P2P5 1572 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 PNMA6FA0A0J9YX94 578 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 HSD17B4P51659 736 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 EXOSC10Q01780 885 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 TRAP1Q12931 704 aaKnown RBP13.4□□□□□ -0.26
COL6A3-206ENST00000409809 RNFT2Q96EX2 444 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 RNPEPQ9H4A4 650 aa13.4□□□□□ -0.26
COL6A3-206ENST00000409809 GSAPA4D1B5 854 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 TRIM49BA6NDI0 452 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 TRIM49D1C9J1S8 452 aa13.4□□□□□ -0.27
COL6A3-206ENST00000409809 PSAPP07602 524 aa13.4□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms