RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 CARNS1A5YM72 827 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 KPNA7A9QM74 516 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 SPTLC1O15269 473 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 SLC9A1P19634 815 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 TAF6P49848 677 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 TAP1Q03518 808 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 GFPT1Q06210 699 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-204ENST00000409441 LRIT3Q3SXY7 679 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 EPC2Q52LR7 807 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 IQCEQ6IPM2 695 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 TMEM173Q86WV6 379 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-204ENST00000409441 KRT222Q8N1A0 295 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 SLC39A11Q8N1S5 342 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 LMO3Q8TAP4 145 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 HASPINQ8TF76 798 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 HNRNPLLQ8WVV9 542 aaKnown RBP14.33□□□□□ -0.12
LIMS1-204ENST00000409441 TAF4BQ92750 862 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 IGSF21Q96ID5 467 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 ARID3AQ99856 593 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 C17orf80Q9BSJ5 609 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 SIX2Q9NPC8 291 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 MARCH5Q9NX47 278 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 GCNT4Q9P109 453 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 ADAM28Q9UKQ2 775 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 DUSP10Q9Y6W6 482 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 RALGAPA2Q2PPJ7 1873 aa14.33□□□□□ -0.12
LIMS1-204ENST00000409441 BTNL10A8MVZ5 291 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 TMEM189-UBE2V1I3L0A0 370 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 ENC1O14682 589 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 ASS1P00966 412 aaKnown RBP14.32□□□□□ -0.12
LIMS1-204ENST00000409441 JAM2P57087 298 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 ZNF699Q32M78 642 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 WDR72Q3MJ13 1102 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 TIGD5Q53EQ6 642 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 WDR44Q5JSH3 913 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 CC2D1AQ6P1N0 951 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-204ENST00000409441 IRF2BP2Q7Z5L9 587 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 BCL7CQ8WUZ0 217 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-204ENST00000409441 ZNF560Q96MR9 790 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 NOX5Q96PH1 765 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 IMPG2Q9BZV3 1241 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 ANKZF1Q9H8Y5 726 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 SLC28A3Q9HAS3 691 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 ARFGAP3Q9NP61 516 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 SNX12Q9UMY4 172 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 RWDD3Q9Y3V2 267 aa14.32□□□□□ -0.12
LIMS1-204ENST00000409441 TDRD15B5MCY1 1934 aaKnown RBP14.32□□□□□ -0.12
LIMS1-204ENST00000409441 SPDYE4A6NLX3 237 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 I3L4J1 428 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 TRAPPC3O43617 180 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 ERLIN1O75477 346 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 GFPT2O94808 682 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 CLSTN1O94985 981 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 STAU1O95793 577 aaKnown RBP14.31□□□□□ -0.12
LIMS1-204ENST00000409441 TCP1P17987 556 aaKnown RBP14.31□□□□□ -0.12
LIMS1-204ENST00000409441 RFX1P22670 979 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 PAX3P23760 479 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 DNAJB2P25686 324 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 CTNNB1P35222 781 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 BRCC3P46736 316 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 ERVK-21P61565 698 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 CBX1P83916 185 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 SV2CQ496J9 727 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 SPOPLQ6IQ16 392 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 DSTYKQ6XUX3 929 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 SPRED2Q7Z698 418 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 KLHL23Q8NBE8 558 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 TATDN2Q93075 761 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 TIFAQ96CG3 184 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 TMEM169Q96HH4 297 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 TGS1Q96RS0 853 aaKnown RBP14.31□□□□□ -0.12
LIMS1-204ENST00000409441 PLVAPQ9BX97 442 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 INTS2Q9H0H0 1204 aaKnown RBP14.31□□□□□ -0.12
LIMS1-204ENST00000409441 VRTNQ9H8Y1 702 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 APOBEC3GQ9HC16 384 aaKnown RBP14.31□□□□□ -0.12
LIMS1-204ENST00000409441 NXF1Q9UBU9 619 aaKnown RBP14.31□□□□□ -0.12
LIMS1-204ENST00000409441 MTUS1Q9ULD2 1270 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 SNX9Q9Y5X1 595 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 FHOD1Q9Y613 1164 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 CAPN6Q9Y6Q1 641 aa14.31□□□□□ -0.12
LIMS1-204ENST00000409441 PDCD11Q14690 1871 aaKnown RBP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 FGF18O76093 207 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 MOCS3O95396 460 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 RB1P06400 928 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 PNMA6AP0CW24 399 aaPredicted RBP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 FERP16591 822 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 MCM3P25205 808 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 PPM1AP35813 382 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 AARSP49588 968 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 KRT17Q04695 432 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 ITIH3Q06033 890 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 ZNF667Q5HYK9 610 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 PPP2R2DQ66LE6 453 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 ZNF572Q7Z3I7 529 aaPredicted RBP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 VPS36Q86VN1 386 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 SENP8Q96LD8 212 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 GPR62Q9BZJ7 368 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 GDAP2Q9NXN4 497 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 HYOU1Q9Y4L1 999 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 CYB561D2O14569 222 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms