RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 GDAP2Q9NXN4 497 aa22.34■■□□□ 1.17
TPM1-208ENST00000404484 KIAA1257Q9ULG3 409 aa22.34■■□□□ 1.17
TPM1-208ENST00000404484 PCDHGC3Q9UN70 934 aa22.34■■□□□ 1.17
TPM1-208ENST00000404484 PCDHA11Q9Y5I1 949 aa22.34■■□□□ 1.17
TPM1-208ENST00000404484 SNX9Q9Y5X1 595 aa22.34■■□□□ 1.17
TPM1-208ENST00000404484 RIOK3O14730 519 aaKnown RBP22.33■■□□□ 1.17
TPM1-208ENST00000404484 EOMESO95936 686 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 NSFP46459 744 aaKnown RBP22.33■■□□□ 1.17
TPM1-208ENST00000404484 CDH8P55286 799 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 CENPCQ03188 943 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 ZNF394Q53GI3 561 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 SLC24A5Q71RS6 500 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 SYCE1Q8N0S2 351 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 TMEM130Q8N3G9 435 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 LPPQ93052 612 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 ZNF518BQ9C0D4 1074 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 THAP2Q9H0W7 228 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 NKX2-4Q9H2Z4 354 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 GTF3C4Q9UKN8 822 aa22.33■■□□□ 1.17
TPM1-208ENST00000404484 SLC34A2O95436 690 aa22.33■■□□□ 1.16
TPM1-208ENST00000404484 RPL9P32969 192 aaKnown RBP22.33■■□□□ 1.16
TPM1-208ENST00000404484 RAD23BP54727 409 aa22.33■■□□□ 1.16
TPM1-208ENST00000404484 HADHBP55084 474 aaKnown RBP22.33■■□□□ 1.16
TPM1-208ENST00000404484 SOX4Q06945 474 aaPredicted RBP22.33■■□□□ 1.16
TPM1-208ENST00000404484 RNF169Q8NCN4 708 aa22.33■■□□□ 1.16
TPM1-208ENST00000404484 TMEM176AQ96HP8 235 aa22.33■■□□□ 1.16
TPM1-208ENST00000404484 NT5C1AQ9BXI3 368 aa22.33■■□□□ 1.16
TPM1-208ENST00000404484 CHD7Q9P2D1 2997 aa22.33■■□□□ 1.16
TPM1-208ENST00000404484 SCN1AP35498 2009 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 KPNA7A9QM74 516 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 ENPP3O14638 875 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 PPEF2O14830 753 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 CD19P15391 556 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 NOMO3P69849 1222 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 GRIK3Q13003 919 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 NAA35Q5VZE5 725 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 PAPD7Q5XG87 772 aaKnown RBP22.32■■□□□ 1.16
TPM1-208ENST00000404484 ZNF598Q86UK7 904 aaKnown RBP22.32■■□□□ 1.16
TPM1-208ENST00000404484 UNC93AQ86WB7 457 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 TMEM35BQ8NCS4 154 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 MYRIPQ8NFW9 859 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 SLC35G2Q8TBE7 412 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 ZNF653Q96CK0 615 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 VCPIP1Q96JH7 1222 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 TSPYL2Q9H2G4 693 aaPredicted RBP22.32■■□□□ 1.16
TPM1-208ENST00000404484 ZNF576Q9H609 170 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 MRFAP1Q9Y605 127 aa22.32■■□□□ 1.16
TPM1-208ENST00000404484 MEIS3P2A8K0S8 358 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 C9IYK1 514 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 INPPL1O15357 1258 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 PALMO75781 387 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 GJB5O95377 273 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 CALCAP01258 141 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 AMHP03971 560 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 FAM163BP0C2L3 166 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 VDRP11473 427 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 PAX3P23760 479 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 BRD2P25440 801 aaKnown RBP22.31■■□□□ 1.16
TPM1-208ENST00000404484 STILQ15468 1287 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 FAM117BQ6P1L5 589 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 DPH6Q7L8W6 267 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 RTN4RL1Q86UN2 441 aaPredicted RBP22.31■■□□□ 1.16
TPM1-208ENST00000404484 DNAAF5Q86Y56 855 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 SLC4A11Q8NBS3 891 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 GSTCDQ8NEC7 633 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 TPCN2Q8NHX9 752 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 WHAMMQ8TF30 809 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 UBE2Q2Q8WVN8 375 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 CYFIP2Q96F07 1278 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 AVENQ9NQS1 362 aaPredicted RBP22.31■■□□□ 1.16
TPM1-208ENST00000404484 RNF19AQ9NV58 838 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 UVRAGQ9P2Y5 699 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 CDC23Q9UJX2 597 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 MICAL3Q7RTP6 2002 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 COL6A3P12111 3177 aa22.31■■□□□ 1.16
TPM1-208ENST00000404484 TMEM265A0A087WTH1 108 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 GRID2IPA4D2P6 1211 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 TLL1O43897 1013 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 CYP1A2P05177 515 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 SCNN1GP51170 649 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 NDST1P52848 882 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 LIN9Q5TKA1 542 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 PHF13Q86YI8 300 aaPredicted RBP22.3■■□□□ 1.16
TPM1-208ENST00000404484 TOP6BLQ8N6T0 577 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 TOP1MTQ969P6 601 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 ARHGEF26Q96DR7 871 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 DDX27Q96GQ7 796 aaKnown RBP22.3■■□□□ 1.16
TPM1-208ENST00000404484 ZBED2Q9BTP6 218 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 ELOVL4Q9GZR5 314 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 LHX5Q9H2C1 402 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 SLC28A3Q9HAS3 691 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 GOLGA2P5Q9HBQ8 144 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 CTTNBP2NLQ9P2B4 639 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 SAR1BQ9Y6B6 198 aa22.3■■□□□ 1.16
TPM1-208ENST00000404484 HUS1O60921 280 aa22.29■■□□□ 1.16
TPM1-208ENST00000404484 MTA2O94776 668 aa22.29■■□□□ 1.16
TPM1-208ENST00000404484 SLU7O95391 586 aaKnown RBP22.29■■□□□ 1.16
TPM1-208ENST00000404484 ATP1A1P05023 1023 aaKnown RBP22.29■■□□□ 1.16
TPM1-208ENST00000404484 CA3P07451 260 aa22.29■■□□□ 1.16
TPM1-208ENST00000404484 CDH5P33151 784 aaPredicted RBP22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms