RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NPR1P16066 1061 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 SLC1A1P43005 524 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 SYDE1Q6ZW31 735 aaPredicted RBP22.09■■□□□ 1.13
CTCF-202ENST00000401394 KATNAL2Q8IYT4 538 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 ALLCQ8N6M5 410 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 DNAJC9Q8WXX5 260 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 GRAMD1AQ96CP6 724 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 TRPC5Q9UL62 973 aaPredicted RBP22.09■■□□□ 1.13
CTCF-202ENST00000401394 PLSCR1O15162 318 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 ONECUT3O60422 494 aaPredicted RBP22.09■■□□□ 1.13
CTCF-202ENST00000401394 SWSAP1Q6NVH7 229 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 C4orf50Q6ZRC1 276 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 ALYREFQ86V81 257 aaKnown RBP22.09■■□□□ 1.13
CTCF-202ENST00000401394 RBBP8NLQ8NC74 664 aaPredicted RBP22.09■■□□□ 1.13
CTCF-202ENST00000401394 PAFAH2Q99487 392 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 ZNF341Q9BYN7 854 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 XPNPEP1Q9NQW7 623 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 GINM1Q9NU53 330 aa22.09■■□□□ 1.13
CTCF-202ENST00000401394 FAM237BA0A1B0GVD1 139 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 CST3P01034 146 aaPredicted RBP22.08■■□□□ 1.13
CTCF-202ENST00000401394 BGNP21810 368 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 ZNF668Q96K58 619 aaPredicted RBP22.08■■□□□ 1.13
CTCF-202ENST00000401394 FNBP1Q96RU3 617 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 AVENQ9NQS1 362 aaPredicted RBP22.08■■□□□ 1.13
CTCF-202ENST00000401394 CHMP2BQ9UQN3 213 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 PRPF4O43172 522 aaKnown RBP eCLIP22.08■■□□□ 1.13
CTCF-202ENST00000401394 TBX10O75333 385 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 MUTP22033 750 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 AMPD1P23109 780 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 ALDH3A1P30838 453 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 CCNG1P51959 295 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 SATB1Q01826 763 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 GCNT1Q02742 428 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 SCARA5Q6ZMJ2 495 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 KBTBD2Q8IY47 623 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 ABRAQ8N0Z2 381 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 FBXO36Q8NEA4 188 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 FEZF2Q8TBJ5 459 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 SERAC1Q96JX3 654 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 FAM111AQ96PZ2 611 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 MARCOQ9UEW3 520 aaPredicted RBP22.08■■□□□ 1.13
CTCF-202ENST00000401394 UBIAD1Q9Y5Z9 338 aa22.08■■□□□ 1.13
CTCF-202ENST00000401394 TMEM63AO94886 807 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 MAN1A1P33908 653 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 HSD17B4P51659 736 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 MXRA7P84157 204 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 RAB6CQ53S08 254 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 SPOCD1Q6ZMY3 1216 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 EXD1Q8NHP7 514 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 RAB6CQ9H0N0 254 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 RIPK3Q9Y572 518 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 ACTL7BQ9Y614 415 aa22.08■■□□□ 1.12
CTCF-202ENST00000401394 DCTN3O75935 186 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 TOP3BO95985 862 aaKnown RBP22.07■■□□□ 1.12
CTCF-202ENST00000401394 KITP10721 976 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 GTF2H1P32780 548 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 CCDC6Q16204 474 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 SNX30Q5VWJ9 437 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 KCTD17Q8N5Z5 321 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 EMC1Q8N766 993 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 FBXL18Q96ME1 805 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 TMX4Q9H1E5 349 aaPredicted RBP22.07■■□□□ 1.12
CTCF-202ENST00000401394 CCDC195A0A1B0GUA6 201 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 SMAPO00193 183 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 CAPN9O14815 690 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 ATP6V1C1P21283 382 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 MARK3P27448 753 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 PTPN4P29074 926 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 SEPT7Q16181 437 aaKnown RBP22.07■■□□□ 1.12
CTCF-202ENST00000401394 WDR44Q5JSH3 913 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 SLC25A41Q8N5S1 370 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 PYROXD1Q8WU10 500 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 RMDN3Q96TC7 470 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 EHMT1Q9H9B1 1298 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 KCNK13Q9HB14 408 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 PCSK1NQ9UHG2 260 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 SERPINA10Q9UK55 444 aa22.07■■□□□ 1.12
CTCF-202ENST00000401394 ALOX15BO15296 676 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 PSTPIP1O43586 416 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 SMIM24O75264 130 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 GNAT1P11488 350 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 NEFHP12036 1026 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 IL1R2P27930 398 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 HSPA1LP34931 641 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 CETN2P41208 172 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 BIRC2Q13490 618 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 RCN2Q14257 317 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 PGM5Q15124 567 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 MTERF2Q49AM1 385 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 CDHR3Q6ZTQ4 885 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 KIAA0319LQ8IZA0 1049 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 ACTL9Q8TC94 416 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 ZNF526Q8TF50 670 aaPredicted RBP22.06■■□□□ 1.12
CTCF-202ENST00000401394 MAIP1Q8WWC4 291 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 SCG3Q8WXD2 468 aaKnown RBP22.06■■□□□ 1.12
CTCF-202ENST00000401394 CPT1BQ92523 772 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 SEPT9Q9UHD8 586 aaPredicted RBP22.06■■□□□ 1.12
CTCF-202ENST00000401394 NRXN2Q9P2S2 1712 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 PIK3R2O00459 728 aa22.06■■□□□ 1.12
CTCF-202ENST00000401394 C4BPAP04003 597 aaKnown RBP22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms