RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PTGER2P43116 358 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 ITIH4Q14624 930 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 SPDYCQ5MJ68 293 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 WDR49Q8IV35 697 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 ACTL9Q8TC94 416 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 NT5C1AQ9BXI3 368 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 KLHL8Q9P2G9 620 aaPredicted RBP19.46■□□□□ 0.71
USP48-204ENST00000400301 WRAP73Q9P2S5 460 aaPredicted RBP19.46■□□□□ 0.71
USP48-204ENST00000400301 CCNE2O96020 404 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 VCPIP1Q96JH7 1222 aa19.46■□□□□ 0.71
USP48-204ENST00000400301 IGF2BP3O00425 579 aaKnown RBP eCLIP19.45■□□□□ 0.7
USP48-204ENST00000400301 CREB3O43889 395 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 MPZL3Q6UWV2 235 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 NUDCD3Q8IVD9 361 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 NSMCE1Q8WV22 266 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 PPCSQ9HAB8 311 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.45■□□□□ 0.7
USP48-204ENST00000400301 ERAP1Q9NZ08 941 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 ZC3H7BQ9UGR2 993 aaKnown RBP19.45■□□□□ 0.7
USP48-204ENST00000400301 LCP1P13796 627 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 KRT4P19013 534 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 JAG1P78504 1218 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 DAB2IPQ5VWQ8 1189 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 WDR75Q8IWA0 830 aaKnown RBP19.45■□□□□ 0.7
USP48-204ENST00000400301 ZNF518BQ9C0D4 1074 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 NINJ2Q9NZG7 142 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 TUBGCP6Q96RT7 1819 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 ADAMTS7Q9UKP4 1686 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 GAS2O43903 313 aaKnown RBP19.45■□□□□ 0.7
USP48-204ENST00000400301 ZNF200P98182 395 aaPredicted RBP19.45■□□□□ 0.7
USP48-204ENST00000400301 PRPSAP1Q14558 356 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 AFAP1L2Q8N4X5 818 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 NWD2Q9ULI1 1742 aa19.45■□□□□ 0.7
USP48-204ENST00000400301 KLRG2A4D1S0 409 aaPredicted RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 ADCY3O60266 1144 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 LSM8O95777 96 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 SLC25A27O95847 323 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 RAP1GAPP47736 663 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 RRP1BQ14684 758 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 ALKBH8Q96BT7 664 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 GCOM2Q9BZD3 368 aaPredicted RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 SPC25Q9HBM1 224 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 RNF181Q9P0P0 153 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 CSDE1O75534 798 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 GPD1P21695 349 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 HOXD13P35453 343 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 GCKP35557 465 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 PTK7Q13308 1070 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 FASTKD5Q7L8L6 764 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 SLFN11Q7Z7L1 901 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 MAGEB2O15479 319 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 MAP3K6O95382 1288 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 OAZ1P54368 228 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 GEMIN4P57678 1058 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 ITKQ08881 620 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 LAMTOR4Q0VGL1 99 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 ANKRD20A8PQ5CZ79 823 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 ASAP3Q8TDY4 903 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 UBN1Q9NPG3 1134 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 DNPEPQ9ULA0 475 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 TIAM2Q8IVF5 1701 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 SHOX2O60902 331 aaPredicted RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 PTPRAP18433 802 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 KYAT1Q16773 422 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 TWF2Q6IBS0 349 aaKnown RBP19.44■□□□□ 0.7
USP48-204ENST00000400301 DNERQ8NFT8 737 aa19.44■□□□□ 0.7
USP48-204ENST00000400301 UBOX5O94941 541 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 NUDT17P0C025 328 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 TMEM62Q0P6H9 643 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 MORF4L2Q15014 288 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 METTL7BQ6UX53 244 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 DAW1Q8N136 415 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.43■□□□□ 0.7
USP48-204ENST00000400301 KDM4CQ9H3R0 1056 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 TLK1Q9UKI8 766 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 MYH10P35580 1976 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 PDGFRBP09619 1106 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 COPS2P61201 443 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 PTK6Q13882 451 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 LY6KQ17RY6 165 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 ZACNQ401N2 412 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 BRSK2Q8IWQ3 736 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 TSSK1BQ9BXA7 367 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 PORCNQ9H237 461 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 VPS11Q9H270 941 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 LRRC19Q9H756 370 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 CTNNAL1Q9UBT7 734 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 PHLPP1O60346 1717 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 NCF2P19878 526 aaPredicted RBP19.43■□□□□ 0.7
USP48-204ENST00000400301 GLRA2P23416 452 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 AUHQ13825 339 aaKnown RBP19.43■□□□□ 0.7
USP48-204ENST00000400301 FAXCQ5TGI0 409 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 TDRD10Q5VZ19 366 aaKnown RBP19.43■□□□□ 0.7
USP48-204ENST00000400301 LLGL2Q6P1M3 1020 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 CYP39A1Q9NYL5 469 aa19.43■□□□□ 0.7
USP48-204ENST00000400301 DCAF8L1A6NGE4 600 aa19.42■□□□□ 0.7
USP48-204ENST00000400301 SERPINB6P35237 376 aa19.42■□□□□ 0.7
USP48-204ENST00000400301 VCPP55072 806 aaKnown RBP19.42■□□□□ 0.7
USP48-204ENST00000400301 SESN2P58004 480 aaPredicted RBP19.42■□□□□ 0.7
USP48-204ENST00000400301 AP1B1Q10567 949 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms