RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 EFHC1Q5JVL4 640 aa11.87□□□□□ -0.51
TTC28-201ENST00000397906 CCDC85CA6NKD9 419 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 ARP10275 920 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 MCF2P10911 925 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 CCDC144BQ3MJ40 725 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 ARHGAP18Q8N392 663 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 BLOC1S5Q8TDH9 187 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 AURKCQ9UQB9 309 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 GTPBP10A4D1E9 387 aaKnown RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 LONRF1Q17RB8 773 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 ATP6V0D2Q8N8Y2 350 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 POP1Q99575 1024 aaKnown RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 TRIM10Q9UDY6 481 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 UBQLN1Q9UMX0 589 aaKnown RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 CCDC15Q0P6D6 951 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 HSP90AA5PQ58FG0 334 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 MTBPQ96DY7 904 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 ZDHHC15Q96MV8 337 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 XPNPEP3Q9NQH7 507 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 KCNQ5Q9NR82 932 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 CHMP2BQ9UQN3 213 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 GRID2IPA4D2P6 1211 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 NCF1BA6NI72 391 aaPredicted RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 NCF1CA8MVU1 366 aaPredicted RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 PYGBP11216 843 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 NCF1P14598 390 aaPredicted RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 BRD8Q9H0E9 1235 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 EPC1Q9H2F5 836 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 MARCOQ9UEW3 520 aaPredicted RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 DIP2CQ9Y2E4 1556 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 SETBP1Q9Y6X0 1596 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 SRGNP10124 158 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 RPA1P27694 616 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 LRRC37BQ96QE4 947 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 PXMP2Q9NR77 195 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 PJA2O43164 708 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 PCDH8O95206 1070 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 DAB2P98082 770 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 PHACTR4Q8IZ21 702 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 PGLYRP2Q96PD5 576 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 PRMT1Q99873 361 aaKnown RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 FHDC1Q9C0D6 1143 aaPredicted RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 VPS28Q9UK41 221 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 RRP15Q9Y3B9 282 aaKnown RBP11.86□□□□□ -0.51
TTC28-201ENST00000397906 KLRC1P26715 233 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 ATL2Q8NHH9 583 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 JADE3Q92613 823 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 OSGEPL1Q9H4B0 414 aa11.86□□□□□ -0.51
TTC28-201ENST00000397906 MYO1GB0I1T2 1018 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 TXNRD3Q86VQ6 643 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 FAM71DQ8N9W8 422 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 MFSD1Q9H3U5 465 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 SUPT20HL2P0C7V6 817 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 AKAP5P24588 427 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 TMA16Q96EY4 203 aaKnown RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 FAM161BQ96MY7 647 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 SLC39A10Q9ULF5 831 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 SEC24DO94855 1032 aaPredicted RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 ARFIP2P53365 341 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 BYSLQ13895 437 aaKnown RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 PHKG1Q16816 387 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 CHP1Q99653 195 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 MAPK9P45984 424 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 EPHB3P54753 998 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 HERVK_113P62684 666 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 FLOT2Q14254 428 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 PATL1Q86TB9 770 aaKnown RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 DLC1Q96QB1 1528 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 CNTNAP2Q9UHC6 1331 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 EIF3DO15371 548 aaKnown RBP eCLIP11.85□□□□□ -0.51
TTC28-201ENST00000397906 FBXO38Q6PIJ6 1188 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 USP49Q70CQ1 688 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 TLK2Q86UE8 772 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 KAT2BQ92831 832 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 ZNF512BQ96KM6 892 aaPredicted RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 SPATC1LQ9H0A9 340 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 GHRP10912 638 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 CUL3Q13618 768 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 TFB1MQ8WVM0 346 aaKnown RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 SMARCAL1Q9NZC9 954 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 GGT7Q9UJ14 662 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 IPPQ9Y573 584 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 ADORA2AP29274 412 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 DHX34Q14147 1143 aaKnown RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 BTG3Q14201 252 aaPredicted RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 PNKPQ96T60 521 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.85□□□□□ -0.51
TTC28-201ENST00000397906 CFAP99D6REC4 459 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 HAUS5O94927 633 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 ZNF484Q5JVG2 852 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 STN1Q9H668 368 aaKnown RBP11.85□□□□□ -0.51
TTC28-201ENST00000397906 BTKQ06187 659 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 DENND5BQ6ZUT9 1274 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 UCMAQ8WVF2 138 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 TSPAN17Q96FV3 270 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 CCSER1Q9C0I3 900 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 DIP2BQ9P265 1576 aa11.85□□□□□ -0.51
TTC28-201ENST00000397906 A0A087WZ62 844 aa11.84□□□□□ -0.51
TTC28-201ENST00000397906 HOXA2O43364 376 aa11.84□□□□□ -0.51
TTC28-201ENST00000397906 SARM1Q6SZW1 724 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms