RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 NMRK1Q9NWW6 199 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 ZNF23P17027 643 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 NR1I3Q14994 352 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CACHD1Q5VU97 1274 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 LINC00523Q86TU6 105 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 C11orf74Q86VG3 221 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CENPLQ8N0S6 344 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CDC42BPBQ9Y5S2 1711 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 NQO1P15559 274 aaKnown RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CPA2P48052 419 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PWP1Q13610 501 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 E4F1Q66K89 784 aaPredicted RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 FAM45BPQ6NSW5 357 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 HEATR4Q86WZ0 1026 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 SCUBE1Q8IWY4 988 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 RTKN2Q8IZC4 609 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 HS6ST3Q8IZP7 471 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 PABPC5Q96DU9 382 aaKnown RBP14.55□□□□□ -0.08
COL4A3-202ENST00000396578 FAR2Q96K12 515 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 SLC29A2Q14542 456 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 WDR72Q3MJ13 1102 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 IL31Q6EBC2 164 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 ANKRD7Q92527 254 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 VPS9D1Q9Y2B5 631 aa14.55□□□□□ -0.08
COL4A3-202ENST00000396578 CYP2E1P05181 493 aaPredicted RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 CYP2D6P10635 497 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 KRT77Q7Z794 578 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 PARVBQ9HBI1 364 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 KANSL1LA0AUZ9 987 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 TRAPPC3O43617 180 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SERPINB5P36952 375 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 RGS2P41220 211 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 ARL4DP49703 201 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 ST8SIA6P61647 398 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 DNAJC3Q13217 504 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 FUT11Q495W5 492 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 ABT1Q9ULW3 272 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 MAGI2Q86UL8 1455 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 UCHL3P15374 230 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 NCOA4Q13772 614 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 TMEM132DQ14C87 1099 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 NLRP9Q7RTR0 991 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 RIN2Q8WYP3 895 aaPredicted RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 MAGEB18Q96M61 343 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 APOL5Q9BWW9 433 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 KCNF1Q9H3M0 494 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SAMD9Q5K651 1589 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 PSMD14O00487 310 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SLC26A4O43511 780 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 CLPTM1O96005 669 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 ANXA11P50995 505 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 CNTN1Q12860 1018 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 CYP51A1Q16850 503 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 USP39Q53GS9 565 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 MROH9Q5TGP6 573 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 AGAP9Q5VTM2 703 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 YAF2Q8IY57 180 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 CCDC126Q96EE4 140 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SMAD5Q99717 465 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 MTA3Q9BTC8 594 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 NPHP3-ACAD11A0A0J9YXS1 232 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 LOC100653049A0A140TA62 436 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 F8W810 466 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 MTSS1O43312 755 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 KRT34O76011 436 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 COX10Q12887 443 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 C1DQ13901 141 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 PDIA5Q14554 519 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 C11orf88Q6PI97 169 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SIRT2Q8IXJ6 389 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 MOV10L1Q9BXT6 1211 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 EIF3LQ9Y262 564 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 PEX5P50542 639 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SHROOM1Q2M3G4 852 aaPredicted RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 RTL3Q8N8U3 475 aaKnown RBP14.54□□□□□ -0.08
COL4A3-202ENST00000396578 SPATA2Q9UM82 520 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 ARAP3Q8WWN8 1544 aa14.54□□□□□ -0.08
COL4A3-202ENST00000396578 CHI3L1P36222 383 aaPredicted RBP14.53□□□□□ -0.08
COL4A3-202ENST00000396578 FAM196AQ6ZSG2 479 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 OTOAQ7RTW8 1153 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 COL23A1Q86Y22 540 aaPredicted RBP14.53□□□□□ -0.08
COL4A3-202ENST00000396578 SMARCAL1Q9NZC9 954 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 LSM7Q9UK45 103 aaKnown RBP14.53□□□□□ -0.08
COL4A3-202ENST00000396578 PCDHA10Q9Y5I2 948 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 SAC3D1A6NKF1 404 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 ZBTB22O15209 634 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 KCNV1Q6PIU1 500 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 METTL16Q86W50 562 aaKnown RBP14.53□□□□□ -0.08
COL4A3-202ENST00000396578 FRMD8Q9BZ67 464 aaPredicted RBP14.53□□□□□ -0.08
COL4A3-202ENST00000396578 DCLRE1BQ9H816 532 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 TRIM10Q9UDY6 481 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 LINC00854A0A1B0GVQ3 168 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 SOAT2O75908 522 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 PTPN7P35236 360 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 MMRN1Q13201 1228 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 OMA1Q96E52 524 aa14.53□□□□□ -0.08
COL4A3-202ENST00000396578 IRX2Q9BZI1 471 aaPredicted RBP14.53□□□□□ -0.08
COL4A3-202ENST00000396578 RNF146Q9NTX7 359 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms