RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TMEM143Q96AN5 459 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 C10orf88Q9H8K7 445 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 SAE1Q9UBE0 346 aaPredicted RBP13.39□□□□□ -0.27
SHMT1-205ENST00000395684 ZMYND8Q9ULU4 1186 aaPredicted RBP13.39□□□□□ -0.27
SHMT1-205ENST00000395684 CLUHO75153 1309 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 ZBED4O75132 1171 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 PEX11AO75192 247 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 ALDH3A1P30838 453 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 PLCB3Q01970 1234 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 MCL1Q07820 350 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 MAPK6Q16659 721 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 MTERF2Q49AM1 385 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 CENPUQ71F23 418 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 INPP5DQ92835 1189 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 GPRASP2Q96D09 838 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 PSMC3IPQ9P2W1 217 aaPredicted RBP13.39□□□□□ -0.27
SHMT1-205ENST00000395684 SLC24A2Q9UI40 661 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 RABGEF1Q9UJ41 708 aa13.39□□□□□ -0.27
SHMT1-205ENST00000395684 SGK1O00141 431 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 CST3P01034 146 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 EDN1P05305 212 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ITGAVP06756 1048 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 PSAPP07602 524 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 EPHB2P29323 1055 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 CCND2P30279 289 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 SSTR1P30872 391 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 CDKN2BP42772 138 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 PSEN1P49768 467 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 MSS51Q4VC12 460 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 TAF1BQ53T94 588 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 TFDP3Q5H9I0 405 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 EFHC2Q5JST6 749 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 LRRC38Q5VT99 294 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 HHATQ5VTY9 493 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 LONP2Q86WA8 852 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 NKD2Q969F2 451 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 TARS2Q9BW92 718 aaKnown RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 C12orf65Q9H3J6 166 aaKnown RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 RNPEPL1Q9HAU8 725 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 RGPD3A6NKT7 1758 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 RGPD4Q7Z3J3 1758 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 LRRD1A4D1F6 860 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 CALB2P22676 271 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 TBXAS1P24557 533 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ADRA1DP25100 572 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ABL2P42684 1182 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ZNF132P52740 706 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 GEMIN4P57678 1058 aaKnown RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 TFDP1Q14186 410 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 RASA2Q15283 850 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ANKRD22Q5VYY1 191 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ZNF276Q8N554 614 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 FLAD1Q8NFF5 587 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ASAP3Q8TDY4 903 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 WDR83Q9BRX9 315 aaKnown RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 TRIM6Q9C030 488 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 JPH1Q9HDC5 661 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 ANKFY1Q9P2R3 1169 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 SHOC2Q9UQ13 582 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 FARP1Q9Y4F1 1045 aaPredicted RBP13.38□□□□□ -0.27
SHMT1-205ENST00000395684 CNTNAP2Q9UHC6 1331 aa13.38□□□□□ -0.27
SHMT1-205ENST00000395684 WDR91A4D1P6 747 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 VWA5AO00534 786 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 GLRA2P23416 452 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 GDF10P55107 478 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ACTR2P61160 394 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 MTM1Q13496 603 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 NCOA4Q13772 614 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 FNBP1LQ5T0N5 605 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 DCUN1D2Q6PH85 259 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ABHD15Q6UXT9 468 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 CCDC125Q86Z20 511 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 SLC35B2Q8TB61 432 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 RPAP3Q9H6T3 665 aaPredicted RBP13.37□□□□□ -0.27
SHMT1-205ENST00000395684 PCDH9Q9HC56 1237 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 NPHS2Q9NP85 383 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 RNF146Q9NTX7 359 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 CYP39A1Q9NYL5 469 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 FBXO40Q9UH90 709 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 CTDP1Q9Y5B0 961 aaPredicted RBP13.37□□□□□ -0.27
SHMT1-205ENST00000395684 H0YCG3 227 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 WNT10BO00744 389 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ATP2A1O14983 1001 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 MAFGO15525 162 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 NEBLO76041 1014 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 TPBGLP0DKB5 382 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ATP4AP20648 1035 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 MTMR2Q13614 643 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 EMC2Q15006 297 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 HIF1AQ16665 826 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ZNF394Q53GI3 561 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 PPP1R15BQ5SWA1 713 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 DNAJC24Q6P3W2 148 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 NLRP9Q7RTR0 991 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 MTDHQ86UE4 582 aaKnown RBP13.37□□□□□ -0.27
SHMT1-205ENST00000395684 WDTC1Q8N5D0 677 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 UBR7Q8N806 425 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 STK32AQ8WU08 396 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 ATG4CQ96DT6 458 aa13.37□□□□□ -0.27
SHMT1-205ENST00000395684 CGRRF1Q99675 332 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms