RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ITIH6Q6UXX5 1313 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SMIM28A0A1B0GU29 152 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 H7C0C1 242 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 PRPSAP2O60256 369 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 GJB6O95452 261 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CST3P01034 146 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CCDC130P13994 396 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 OR1D2P34982 312 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ATP5OP48047 213 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 GNGT1P63211 74 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 FPGSQ05932 587 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 TRIP13Q15645 432 aaPredicted RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ACCSLQ4AC99 568 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SYCP2LQ5T4T6 812 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 KDELC2Q7Z4H8 507 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SUGP1Q8IWZ8 645 aaKnown RBP10.89□□□□□ -0.67
COL6A3-205ENST00000392004 EMC1Q8N766 993 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ATAD1Q8NBU5 361 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 SLC35C1Q96A29 364 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 ZNF558Q96NG5 402 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 TNFSF13BQ9Y275 285 aa10.89□□□□□ -0.67
COL6A3-205ENST00000392004 CLDN5O00501 218 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 PER2O15055 1255 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 HOXA2O43364 376 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 ENDOD1O94919 500 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 GTF2BQ00403 316 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SMTNL2Q2TAL5 461 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 C10orf120Q5SQS8 335 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 MAMDC4Q6UXC1 1216 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 RFX6Q8HWS3 928 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 ARHGEF19Q8IW93 802 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SLC20A1Q8WUM9 679 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 TMEM40Q8WWA1 233 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 CGRRF1Q99675 332 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 FAM118BQ9BPY3 351 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 NIFKQ9BYG3 293 aaKnown RBP10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SUDS3Q9H7L9 328 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-205ENST00000392004 TRIM10Q9UDY6 481 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 CNTNAP2Q9UHC6 1331 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 TARSL2A2RTX5 802 aaKnown RBP10.88□□□□□ -0.67
COL6A3-205ENST00000392004 LGR5O75473 907 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 NCAM1P13591 858 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 EDNRBP24530 442 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 CLCNKBP51801 687 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 MTM1Q13496 603 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 DENND2CQ68D51 928 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 MICALCLQ6ZW33 695 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 B4GALNT4Q76KP1 1039 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SH3RF1Q7Z6J0 888 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 BRSK2Q8IWQ3 736 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 KCTD6Q8NC69 237 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SLC2A14Q8TDB8 520 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 KRT82Q9NSB4 513 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 ATP8B3O60423 1300 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SSC5DA1L4H1 1573 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 HSF2BPO75031 334 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 HOXC6P09630 235 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 FAM200BP0CF97 657 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 SDC4P31431 198 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 GBP2P32456 591 aaPredicted RBP10.88□□□□□ -0.67
COL6A3-205ENST00000392004 C18orf8Q96DM3 657 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 BTBD6Q96KE9 485 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 DHX35Q9H5Z1 703 aaKnown RBP10.88□□□□□ -0.67
COL6A3-205ENST00000392004 PCDHA13Q9Y5I0 950 aa10.88□□□□□ -0.67
COL6A3-205ENST00000392004 GRXCR1A8MXD5 290 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 GOLGA8KD6RF30 607 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 DNM1LO00429 736 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 CXCL14O95715 111 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SYF2O95926 243 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 MMEP08473 750 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 PDGFRAP16234 1089 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 ARL2P36404 184 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KYAT1Q16773 422 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KLHDC7AQ5VTJ3 777 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KAT2BQ92831 832 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SYT15Q9BQS2 421 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 PLCD4Q9BRC7 762 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 PDZD7Q9H5P4 517 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 CPSF3Q9UKF6 684 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 ZNF148Q9UQR1 794 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 TLDC2A0PJX2 215 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 A6NNZ2 444 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 NDUFAB1O14561 156 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SLC16A3O15427 465 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SOAT2O75908 522 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 CPP00450 1065 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KRT1P04264 644 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 HSPA8P11142 646 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 MBTD1Q05BQ5 628 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 IFFO1Q0D2I5 559 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 TUBB8Q3ZCM7 444 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 CDKAL1Q5VV42 579 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 C1orf228Q6PIY5 440 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 UHMK1Q8TAS1 419 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 HHIPL1Q96JK4 782 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 LAMA4Q16363 1823 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 TYW5A2RUC4 315 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SPTLC1O15269 473 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 ZBTB24O43167 697 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms