RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 NOP9Q86U38 636 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 ZCCHC9Q8N567 271 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 CLPTM1LQ96KA5 538 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 MANSC1Q9H8J5 431 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 SSU72Q9NP77 194 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 TIMMDC1Q9NPL8 285 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 DDTLA6NHG4 134 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 USP17L10C9JJH3 530 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 TGFB1I1O43294 461 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 AP1G1O43747 822 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 PGM3O95394 542 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 DLDP09622 509 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 TAL1P17542 331 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 KRT4P19013 534 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 VARSP26640 1264 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 PSMC2P35998 433 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 DLGAP5Q15398 846 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 C6orf163Q5TEZ5 329 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 PCNX4Q63HM2 1172 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 ULK2Q8IYT8 1036 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 ADGRF4Q8IZF3 695 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 LARGE2Q8N3Y3 721 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 RBM15BQ8NDT2 890 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 ZNF564Q8TBZ8 553 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 PCDHB18PQ96TA0 734 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 NUP85Q9BW27 656 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 SAYSD1Q9NPB0 183 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 ZNF277Q9NRM2 450 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 DDX18Q9NVP1 670 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 ARMCX1Q9P291 453 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 SLC7A8Q9UHI5 535 aa15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 BARX2Q9UMQ3 279 aaPredicted RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 R3HDM2Q9Y2K5 976 aaKnown RBP15.42■□□□□ 0.06
VPS9D1-201ENST00000389386 SMIM18P0DKX4 95 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 KLHDC10Q6PID8 442 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 POTEGQ6S5H5 508 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 UGT2A3Q6UWM9 527 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 FAM172AQ8WUF8 416 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 SLC5A5Q92911 643 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 OXNAD1Q96HP4 312 aaPredicted RBP15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 PLVAPQ9BX97 442 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 ADAM33Q9BZ11 813 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 IKZF4Q9H2S9 585 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 RIOX1Q9H6W3 641 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 H3BRJ5 948 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 MAGEB3O15480 346 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 BCRP11274 1271 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 CHN2P52757 468 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 ARL4CP56559 192 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 DLG1Q12959 904 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 PDK3Q15120 406 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 RASA2Q15283 850 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 SYDE2Q5VT97 1194 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 MAML3Q96JK9 1138 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 TSSK1BQ9BXA7 367 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 FOXP3Q9BZS1 431 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 VPS11Q9H270 941 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 BCAS3Q9H6U6 928 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 JMJD4Q9H9V9 463 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 BTBD7Q9P203 1132 aa15.41■□□□□ 0.06
VPS9D1-201ENST00000389386 C2orf71A6NGG8 1288 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 FKBP6O75344 327 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 TGDSO95455 350 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 CYP1A2P05177 515 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 TFAP2AP05549 437 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 FUT4P22083 530 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 PAX3P23760 479 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 RPL5P46777 297 aaKnown RBP15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 GEMIN4P57678 1058 aaKnown RBP15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 PSMC6P62333 389 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 DCTN2Q13561 401 aaKnown RBP15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 BTG3Q14201 252 aaPredicted RBP15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 C1orf228Q6PIY5 440 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 CCDC89Q8N998 374 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 RUSC1Q9BVN2 902 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 NMUR2Q9GZQ4 415 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 CAPN14A8MX76 684 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 SLC26A4O43511 780 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 GDF11O95390 407 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 CD97P48960 835 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 LRRC36Q1X8D7 754 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 SH3D19Q5HYK7 790 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 C1orf146Q5VVC0 180 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 RNF111Q6ZNA4 994 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 TREML1Q86YW5 311 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 PIP4K2CQ8TBX8 421 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 MRRFQ96E11 262 aaKnown RBP15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 THTPAQ9BU02 230 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 RANBP17Q9H2T7 1088 aaKnown RBP15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 S100A14Q9HCY8 104 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 SCN9AQ15858 1988 aa15.4■□□□□ 0.06
VPS9D1-201ENST00000389386 RSPH10B2B2RC85 870 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 hCG_1984214I3L0E3 225 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 STRNO43815 780 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 GCNT3O95395 438 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 RSPH10BP0C881 870 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 ZNF543Q08ER8 600 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 CCDC142Q17RM4 750 aa15.39■□□□□ 0.05
VPS9D1-201ENST00000389386 AAGABQ6PD74 315 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms