RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 BDH2Q9BUT1 245 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 COMMD9Q9P000 198 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 SLC30A1Q9Y6M5 507 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF24P17028 368 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 CLEC16AQ2KHT3 1053 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 TYW3Q6IPR3 259 aaKnown RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 TMED8Q6PL24 325 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF438Q7Z4V0 828 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 PIGSQ96S52 555 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 SH2B2O14492 632 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 YWHAQP27348 245 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 PLIN5Q00G26 463 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 CHRNDQ07001 517 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 SNX17Q15036 470 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 FAM49AQ9H0Q0 323 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 RERGLQ9H628 205 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 EFCAB1Q9HAE3 211 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 RABGEF1Q9UJ41 708 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 A0A1W2PQC6 194 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 CLTBP09497 229 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 MIEF2Q96C03 454 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 PPP1R16BQ96T49 567 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 GTF2E2P29084 291 aaKnown RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 GRIK1P39086 918 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 KCNT1Q5JUK3 1230 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 HS6ST3Q8IZP7 471 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 RDM1Q8NG50 284 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 MUC3BQ9H195 1237 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 C11orf74Q86VG3 221 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 EPHX4Q8IUS5 362 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 C1orf50Q9BV19 199 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 STN1Q9H668 368 aaKnown RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 TMA7Q9Y2S6 64 aaKnown RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 STILQ15468 1287 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 DGUOKQ16854 277 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 MMGT1Q8N4V1 131 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 HEATR9A2RTY3 570 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 ERFP50548 548 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 RESTQ13127 1097 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF211Q13398 564 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 ANKMY2Q8IV38 441 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 NOD2Q9HC29 1040 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 FRMD5Q7Z6J6 570 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 TRAPPC9Q96Q05 1148 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 GOLPH3Q9H4A6 298 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 CATSPERBQ9H7T0 1116 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 KLHL11Q9NVR0 708 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 AMACRQ9UHK6 382 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 LINC00854A0A1B0GVQ3 168 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 TMEM120BA0PK00 339 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 NFICP08651 508 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 DCAF4Q8WV16 495 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 FAM213AQ9BRX8 229 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 OSBPL5Q9H0X9 879 aaPredicted RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 VWA5AO00534 786 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 LIFRP42702 1097 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 SULT1E1P49888 294 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 LONRF1Q17RB8 773 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 ERAP2Q6P179 960 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 RBAKQ9NYW8 714 aaPredicted RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 ZBTB1Q9Y2K1 713 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 NPC1L1Q9UHC9 1359 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PDE8BO95263 885 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 GRK3P35626 688 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 TRAF2Q12933 501 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 RAB6BQ9NRW1 208 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 TNFAIP8O95379 198 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 TIMM50Q3ZCQ8 353 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 MZT2BQ6NZ67 158 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 C3orf62Q6ZUJ4 267 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 LPCAT2Q7L5N7 544 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 VN1R5Q7Z5H4 357 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 TRPM5Q9NZQ8 1165 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 LIMA1Q9UHB6 759 aaKnown RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PIGOQ8TEQ8 1089 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF624Q9P2J8 865 aaPredicted RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 FBXO40Q9UH90 709 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 FOSL2P15408 326 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PAICSP22234 425 aaKnown RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 CASP12Q6UXS9 341 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PAK5Q9P286 719 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 KIAA0391O15091 583 aaKnown RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 CALB2P22676 271 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 OASLQ15646 514 aaKnown RBP12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PTPN21Q16825 1174 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PRMT9Q6P2P2 845 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 C18orf8Q96DM3 657 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 APOL5Q9BWW9 433 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 THNSL1Q8IYQ7 743 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 CDK20Q8IZL9 346 aa12.09□□□□□ -0.47
VPS13A-205ENST00000376636 PPEF1O14829 653 aaPredicted RBP12.08□□□□□ -0.47
VPS13A-205ENST00000376636 GEMIN4P57678 1058 aaKnown RBP12.08□□□□□ -0.47
VPS13A-205ENST00000376636 ATP1A4Q13733 1029 aa12.08□□□□□ -0.47
VPS13A-205ENST00000376636 PDK1Q15118 436 aa12.08□□□□□ -0.47
VPS13A-205ENST00000376636 CCDC36Q8IYA8 594 aa12.08□□□□□ -0.47
VPS13A-205ENST00000376636 RAD54LQ92698 747 aa12.08□□□□□ -0.47
VPS13A-205ENST00000376636 TUBA8Q9NY65 449 aaPredicted RBP12.08□□□□□ -0.47
VPS13A-205ENST00000376636 EXTL3O43909 919 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms