RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TIPINQ9BVW5 301 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 PDGFDQ9GZP0 370 aaPredicted RBP12.79□□□□□ -0.36
CLIP3-201ENST00000360535 TXLNGQ9NUQ3 528 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 IP6K2Q9UHH9 426 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 SCINQ9Y6U3 715 aa12.79□□□□□ -0.36
CLIP3-201ENST00000360535 CFAP69A5D8W1 941 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 ENTPD5O75356 428 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 FGFR1P11362 822 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PSEN1P49768 467 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 ZBTB16Q05516 673 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 HIF1AQ16665 826 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 SAMD3Q8N6K7 520 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RSAD2Q8WXG1 361 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 HSPH1Q92598 858 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 SPDL1Q96EA4 605 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 EBF2Q9HAK2 575 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 USH1CQ9Y6N9 552 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PMM2O15305 246 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 CST8O60676 142 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 EDN1P05305 212 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 YY1P25490 414 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PSMA2P25787 234 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 CTCFP49711 727 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 HMGCS2P54868 508 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 MKRN3Q13064 507 aaKnown RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RIPK1Q13546 671 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 CRELD2Q6UXH1 353 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RPAINQ86UA6 219 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 ZC3H18Q86VM9 953 aaKnown RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 VSIG10LQ86VR7 867 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 THNSL1Q8IYQ7 743 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RCOR2Q8IZ40 523 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 ACTL9Q8TC94 416 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 NUDCD1Q96RS6 583 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 CALN1Q9BXU9 219 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 LGALS13Q9UHV8 139 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 CHMP2BQ9UQN3 213 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 ONECUT3O60422 494 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 CD48P09326 243 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PCK1P35558 622 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RAP1GAPP47736 663 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 OTUD4Q01804 1114 aaKnown RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 FSTL1Q12841 308 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PSMD6Q15008 389 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 SMAD1Q15797 465 aaKnown RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 WDR72Q3MJ13 1102 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 MSS51Q4VC12 460 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 EAPPQ56P03 285 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 OTOAQ7RTW8 1153 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 TTC17Q96AE7 1141 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RBM41Q96IZ5 413 aaKnown RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 RAB3IPQ96QF0 476 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PPP1R16BQ96T49 567 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 DONSONQ9NYP3 566 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 SLC17A7Q9P2U7 560 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 PPP1R1BQ9UD71 204 aaPredicted RBP12.78□□□□□ -0.36
CLIP3-201ENST00000360535 ZFP69BQ9UJL9 534 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 SYNPO2Q9UMS6 1093 aa12.78□□□□□ -0.36
CLIP3-201ENST00000360535 THSD7AQ9UPZ6 1657 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 TCRBV7S3A2A0A539 114 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 VWA5AO00534 786 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 RGS20O76081 388 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 GCLCP48506 637 aaPredicted RBP12.77□□□□□ -0.36
CLIP3-201ENST00000360535 LMNB2Q03252 620 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF252P-AS1Q0IIN9 211 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 TRPC3Q13507 836 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 MAPK6Q16659 721 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 FNBP1LQ5T0N5 605 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 RNF43Q68DV7 783 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 PLEKHA7Q6IQ23 1121 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 BZW1Q7L1Q6 419 aaKnown RBP12.77□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF677Q86XU0 584 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 CCHCR1Q8TD31 782 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 ZNF75CPQ92670 426 aaPredicted RBP12.77□□□□□ -0.36
CLIP3-201ENST00000360535 NTPCRQ9BSD7 190 aaKnown RBP12.77□□□□□ -0.36
CLIP3-201ENST00000360535 TBC1D10AQ9BXI6 508 aa12.77□□□□□ -0.36
CLIP3-201ENST00000360535 SP2Q02086 613 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 ASRGL1Q7L266 308 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 LRRC6Q86X45 466 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 ALLCQ8N6M5 410 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 FAM71DQ8N9W8 422 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 RFWD2Q8NHY2 731 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 TCP10LQ8TDR4 215 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 PLA2G6O60733 806 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 KCNA2P16389 499 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 GLRA2P23416 452 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 RFC1P35251 1148 aaPredicted RBP12.77□□□□□ -0.37
CLIP3-201ENST00000360535 TAF5Q15542 800 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 NLRP9Q7RTR0 991 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 SAMD7Q7Z3H4 446 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 CCDC125Q86Z20 511 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 RFX6Q8HWS3 928 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 CTAGE3PQ8IX95 158 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 FBXO36Q8NEA4 188 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 SLC7A3Q8WY07 619 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 ARHGAP28Q9P2N2 729 aa12.77□□□□□ -0.37
CLIP3-201ENST00000360535 TMEM191CA6NGB0 347 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 TMEM191BP0C7N4 346 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CPA2P48052 419 aa12.76□□□□□ -0.37
CLIP3-201ENST00000360535 CDH8P55286 799 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms