RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ADRB2P07550 413 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DHRS4L1P0CG22 281 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 BGNP21810 368 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TPP2P29144 1249 aaPredicted RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 SSTR1P30872 391 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SREBF1P36956 1147 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ETV4P43268 484 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ARSEP51690 589 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GEMIN4P57678 1058 aaKnown RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 GPS1Q13098 491 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 AP3B2Q13367 1082 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GRM2Q14416 872 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TRMT5Q32P41 509 aaKnown RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 RNASEH2BQ5TBB1 312 aaKnown RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 TMPRSS6Q8IU80 811 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SMC1BQ8NDV3 1235 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 OR6Y1Q8NGX8 325 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CCDC110Q8TBZ0 833 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 HELQQ8TDG4 1101 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 VTI1AQ96AJ9 217 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 LENG1Q96BZ8 264 aaPredicted RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 MPP4Q96JB8 637 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DHRS4Q9BTZ2 278 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 RANBP17Q9H2T7 1088 aaKnown RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 KLHL11Q9NVR0 708 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ZDHHC7Q9NXF8 308 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SEL1LQ9UBV2 794 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 MYH11P35749 1972 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 NFASCO94856 1347 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 IGLV3-22A0A075B6J6 115 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 GOLGA8SH3BPF8 625 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GOLGA8MH3BSY2 632 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TM9SF1O15321 606 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ATP9BO43861 1147 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 OPHN1O60890 802 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 KRT10P13645 584 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GLRA2P23416 452 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GJC1P36383 396 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 MXI1P50539 228 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 AP2B1P63010 937 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DLG1Q12959 904 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 PTP4A2Q12974 167 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 PICALMQ13492 652 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 NFIXQ14938 502 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DDB1Q16531 1140 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 LRRC36Q1X8D7 754 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SHROOM1Q2M3G4 852 aaPredicted RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 MSS51Q4VC12 460 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TMCO4Q5TGY1 634 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ADGRD1Q6QNK2 874 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 MCOLN2Q8IZK6 566 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 PAFAH2Q99487 392 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 THTPAQ9BU02 230 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DNAJB4Q9UDY4 337 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 BLOC1S6Q9UL45 172 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 FOCADQ5VW36 1801 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 PI4K2BG5E9Z4 385 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 VILLO15195 856 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ATP6V1G1O75348 118 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 PROSCO94903 275 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SMIM18P0DKX4 95 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 UNGP13051 313 aaPredicted RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 TCF4P15884 667 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 HOXA13P31271 388 aaPredicted RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 CIITAP33076 1130 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SHMT1P34896 483 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 AQP4P55087 323 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 HPCAP84074 193 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 KDSRQ06136 332 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TMEM62Q0P6H9 643 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CETN1Q12798 172 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 SEPT7Q16181 437 aaKnown RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 ATP13A4Q4VNC1 1196 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CES4AQ5XG92 561 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 LPCAT4Q643R3 524 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CEP128Q6ZU80 1094 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 OTOP1Q7RTM1 612 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 NLRX1Q86UT6 975 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CHSY1Q86X52 802 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ARHGAP24Q8N264 748 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 NME8Q8N427 588 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 OGFOD1Q8N543 542 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 ALLCQ8N6M5 410 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 FAM172AQ8WUF8 416 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DCAKDQ8WVC6 231 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 CPA5Q8WXQ8 436 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 AGBL1Q96MI9 1066 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 FAM111AQ96PZ2 611 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 WDR18Q9BV38 432 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 MIS12Q9H081 205 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GLT8D2Q9H1C3 349 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 TMEM165Q9HC07 324 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GPAMQ9HCL2 828 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 DDX4Q9NQI0 724 aaKnown RBP7.14□□□□□ -1.27
VPS39-202ENST00000348544 CNTN3Q9P232 1028 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 GMEB1Q9Y692 573 aa7.14□□□□□ -1.27
VPS39-202ENST00000348544 A0A0J9YVX5 310 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 PGM3O95394 542 aa7.13□□□□□ -1.27
VPS39-202ENST00000348544 CYP3A4P08684 503 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms