RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 RSPH3Q86UC2 560 aa23.78■■□□□ 1.4
PDLIM2-203ENST00000339162 UBA3Q8TBC4 463 aa23.78■■□□□ 1.4
PDLIM2-203ENST00000339162 ZFP42Q96MM3 310 aa23.78■■□□□ 1.4
PDLIM2-203ENST00000339162 UBQLN1Q9UMX0 589 aaKnown RBP23.78■■□□□ 1.4
PDLIM2-203ENST00000339162 M0QYV0 167 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 ATP8B1O43520 1251 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 THPOP40225 353 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 SSR1P43307 286 aaKnown RBP23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 MAP9Q49MG5 647 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 CCSAPQ6IQ19 270 aaPredicted RBP23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 PPP1R2P3Q6NXS1 205 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 DNAJC24Q6P3W2 148 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 CPXM1Q96SM3 734 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 CREBZFQ9NS37 354 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 NME7Q9Y5B8 376 aa23.77■■□□□ 1.4
PDLIM2-203ENST00000339162 GOLGA8SH3BPF8 625 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 HCRTO43612 131 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 GJC1P36383 396 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 TAS2R40P59535 323 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 NKX3-2P78367 333 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 PTGISQ16647 500 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 SENP6Q9GZR1 1112 aaPredicted RBP23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 LHX5Q9H2C1 402 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 GDF3Q9NR23 364 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 TCRBV5S1A1TA0A578 114 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 IBSPP21815 317 aaPredicted RBP23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 DCUN1D2Q6PH85 259 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 IFT20Q8IY31 132 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 KRT222Q8N1A0 295 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 CASKIN2Q8WXE0 1202 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 NAP1L3Q99457 506 aaPredicted RBP23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 NT5C1AQ9BXI3 368 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 ST7Q9NRC1 585 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 NFU1Q9UMS0 254 aa23.76■■□□□ 1.39
PDLIM2-203ENST00000339162 RALGAPA2Q2PPJ7 1873 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 TMEM191CA6NGB0 347 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 SPTLC1O15269 473 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 TTI1O43156 1089 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 VDRP11473 427 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 CYP3A5P20815 502 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 SLC1A1P43005 524 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 HTRA3P83110 453 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 OGDHQ02218 1023 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 ZNF252P-AS1Q0IIN9 211 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 SGO2Q562F6 1265 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 ACOT1Q86TX2 421 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 AENQ8WTP8 325 aaKnown RBP23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 LPIN3Q9BQK8 851 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 AGO3Q9H9G7 860 aaKnown RBP23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 A0A0U1RQG5 324 aaPredicted RBP23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 PIK3R2O00459 728 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 HMGCRP04035 888 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 TCF4P15884 667 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 GADD45GIP1Q8TAE8 222 aaPredicted RBP23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 RAET1EQ8TD07 263 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 TRMT13Q9NUP7 481 aaKnown RBP23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 CACNG4Q9UBN1 327 aa23.75■■□□□ 1.39
PDLIM2-203ENST00000339162 CASP8AP2Q9UKL3 1982 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 AFF1P51825 1210 aaKnown RBP23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 SOWAHAQ2M3V2 549 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 FBXO47Q5MNV8 452 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 DDX42Q86XP3 938 aaKnown RBP eCLIP23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 LRRC52Q8N7C0 313 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 LPPQ93052 612 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 SYNCQ9H7C4 482 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 GOLGA6L10A0A0M3HER8 536 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 F8VP50 259 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 PIRO00625 290 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 ERBB2P04626 1255 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 KCNE1P15382 129 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 CNGA2Q16280 664 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 XKR4Q5GH76 650 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 ZNF618Q5T7W0 954 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 SND1Q7KZF4 910 aaKnown RBP eCLIP23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 SLC13A5Q86YT5 568 aaPredicted RBP23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 PRELID2Q8N945 189 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 OR6B3Q8NGW1 331 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 RUBCNQ92622 972 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 DDX27Q96GQ7 796 aaKnown RBP23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 FAM49BQ9NUQ9 324 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 DDX20Q9UHI6 824 aaKnown RBP23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 TSPAN16Q9UKR8 245 aa23.74■■□□□ 1.39
PDLIM2-203ENST00000339162 PTGESO14684 152 aa23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 IGFBP6P24592 240 aaPredicted RBP23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 GPD2P43304 727 aa23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 PSMC1P62191 440 aaKnown RBP23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 PPP1R15BQ5SWA1 713 aa23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 C3orf20Q8ND61 904 aa23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 C18orf8Q96DM3 657 aa23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 IP6K2Q9UHH9 426 aa23.73■■□□□ 1.39
PDLIM2-203ENST00000339162 CD4P01730 458 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 MGAT3Q09327 533 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 ATP13A4Q4VNC1 1196 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 MAP3K21Q5TCX8 1036 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 TRIM51Q9BSJ1 452 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 DPEP3Q9H4B8 488 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 SLITRK6Q9H5Y7 841 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 FAM105AQ9NUU6 356 aa23.72■■□□□ 1.39
PDLIM2-203ENST00000339162 KLHL11Q9NVR0 708 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms