RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 DHX35Q9H5Z1 703 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 CATSPERBQ9H7T0 1116 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 C8orf4Q9NR00 106 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 TAGLN3Q9UI15 199 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 RXRGP48443 463 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 URGCPQ8TCY9 931 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SNX19Q92543 992 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 RAB6BQ9NRW1 208 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 AP3M1Q9Y2T2 418 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 STARD13Q9Y3M8 1113 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SCN11AQ9UI33 1791 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SERPINB3P29508 390 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 PATL1Q86TB9 770 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 ATPAF2Q8N5M1 289 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 TBCBQ99426 244 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 ARFGEF2Q9Y6D5 1785 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SRP72O76094 671 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 TGM2P21980 687 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 DCAF4L1Q3SXM0 396 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 DALRD3Q5D0E6 543 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 GMCL1Q96IK5 515 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SMARCAD1Q9H4L7 1026 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 MLXIPLQ9NP71 852 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 MYL4P12829 197 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 TTKP33981 857 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 ZCWPW2Q504Y3 356 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 PTPRN2Q92932 1015 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 DBNDD1Q9H9R9 158 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 CTNNAL1Q9UBT7 734 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 ANXA9O76027 345 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 RCN1Q15293 331 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 MAPRE1Q15691 268 aaKnown RBP10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 LDHDQ86WU2 507 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 ANKRD6Q9Y2G4 727 aa10.73□□□□□ -0.69
CCDC88A-202ENST00000336838 SORBS3O60504 671 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CLASP2O75122 1294 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 ANP32DO95626 131 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 FASTKD5Q7L8L6 764 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 MYLK4Q86YV6 388 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 DLG3Q92796 817 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 VTI1BQ9UEU0 232 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 MYO18AQ92614 2054 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 MAP3K13O43283 966 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 HERVK_113P62684 666 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CUL2Q13617 745 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 DSTYKQ6XUX3 929 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CROCCP3Q8IVE0 287 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 THTPAQ9BU02 230 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 EFCAB1Q9HAE3 211 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 PHTF1Q9UMS5 762 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 RASA1P20936 1047 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CDK7P50613 346 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 TRIP10Q15642 601 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 UGT3A1Q6NUS8 523 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 TRAPPC9Q96Q05 1148 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 SAC3D1A6NKF1 404 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 ABHD2P08910 425 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 TRPC1P48995 793 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 IL1RL1Q01638 556 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 MAGEC3Q8TD91 643 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 KCNV2Q8TDN2 545 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 FAM167BQ9BTA0 163 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 ZDHHC17Q8IUH5 632 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 MXRA8Q9BRK3 442 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 A0A087X0T9 212 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 SDR42E2A6NKP2 422 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 FAM228BP0C875 321 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 ATICP31939 592 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CTCFP49711 727 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 TFB1MQ8WVM0 346 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 RSPH1Q8WYR4 309 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 LRRC39Q96DD0 335 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CYP4F11Q9HBI6 524 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 HIPK4Q8NE63 616 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CATSPER2Q96P56 530 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 AXIN2Q9Y2T1 843 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 LAMB4A4D0S4 1761 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 MICAL3Q7RTP6 2002 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 B2RBV5 119 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 RALAP11233 206 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 C4BPBP20851 252 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 GPD1P21695 349 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 PCSK1P29120 753 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 TOB1P50616 345 aaPredicted RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 EMC2Q15006 297 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 AARS2Q5JTZ9 985 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 SPOUT1Q5T280 376 aaKnown RBP10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CATSPER3Q86XQ3 398 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 APPL2Q8NEU8 664 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 CCT7Q99832 543 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 TMEM117Q9H0C3 514 aa10.72□□□□□ -0.69
CCDC88A-202ENST00000336838 HOXB8P17481 243 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 SERPINB1P30740 379 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 NIPA1Q7RTP0 329 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC22A9Q8IVM8 553 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 CELF1Q92879 486 aaKnown RBP10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 AVENQ9NQS1 362 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 TRIM10Q9UDY6 481 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 DAB1O75553 588 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 CYP11B1P15538 503 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms