RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ADSSL1Q8N142 457 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 RSAD2Q8WXG1 361 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 ELMO3Q96BJ8 720 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 LRFN3Q9BTN0 628 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 HSFX1Q9UBD0 423 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 NME7Q9Y5B8 376 aa16.97■□□□□ 0.31
CLN3-201ENST00000333496 TRIM49BA6NDI0 452 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 IKBKBO14920 756 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 LMO2P25791 158 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 PSMC2P35998 433 aaKnown RBP16.96■□□□□ 0.31
CLN3-201ENST00000333496 CCR2P41597 374 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 LHX1P48742 406 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 VAMP7P51809 220 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 MCCD1P59942 119 aaPredicted RBP16.96■□□□□ 0.31
CLN3-201ENST00000333496 BIRC3Q13489 604 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 TRPC3Q13507 836 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 WDR72Q3MJ13 1102 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 INTS6LQ5JSJ4 861 aaKnown RBP16.96■□□□□ 0.31
CLN3-201ENST00000333496 ANKRD40Q6AI12 368 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 SV2AQ7L0J3 742 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 FAM186BQ8IYM0 893 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 ST13P5Q8NFI4 369 aaPredicted RBP16.96■□□□□ 0.31
CLN3-201ENST00000333496 TCEAL4Q96EI5 215 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 ZNF512Q96ME7 567 aaPredicted RBP16.96■□□□□ 0.31
CLN3-201ENST00000333496 GBP4Q96PP9 640 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 MMS19Q96T76 1030 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 LRRC3Q9BY71 257 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 VRTNQ9H8Y1 702 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 CDH7Q9ULB5 785 aa16.96■□□□□ 0.31
CLN3-201ENST00000333496 PHACTR2O75167 634 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 ATICP31939 592 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 EPHA5P54756 1037 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 MYL7Q01449 175 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 TSPY1Q01534 308 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 SMARCB1Q12824 385 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 NCOA4Q13772 614 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 TMEM31Q5JXX7 168 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 INTS8Q75QN2 995 aaKnown RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 NPAS3Q8IXF0 933 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 ZC3H3Q8IXZ2 948 aaKnown RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 DCP1BQ8IZD4 617 aaKnown RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 SPPL2BQ8TCT7 592 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 C2orf15Q8WU43 125 aaKnown RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 ING5Q8WYH8 240 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 SYAP1Q96A49 352 aaPredicted RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 MRPL45Q9BRJ2 306 aaKnown RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 GTF3C4Q9UKN8 822 aa16.96■□□□□ 0.3
CLN3-201ENST00000333496 MRPS23Q9Y3D9 190 aaKnown RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 ZFP37Q9Y6Q3 630 aaPredicted RBP16.96■□□□□ 0.3
CLN3-201ENST00000333496 WDFY4Q6ZS81 3184 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 ANHXE9PGG2 379 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 ATP2C2O75185 946 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 MOSPD3O75425 235 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 TRIM49P0CI25 452 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 TRIM49CP0CI26 452 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 CEBPBP17676 345 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 ATF6P18850 670 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 WARSP23381 471 aaKnown RBP16.95■□□□□ 0.3
CLN3-201ENST00000333496 ALDH1A3P47895 512 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 PPP3CAQ08209 521 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 MTMR3Q13615 1198 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 MORC3Q14149 939 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 MGAT5BQ3V5L5 792 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 TRIM67Q6ZTA4 783 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 TMC8Q8IU68 726 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 ELMOD1Q8N336 334 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 ASIC4Q96FT7 647 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 MKNK1Q9BUB5 465 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 GTPBP4Q9BZE4 634 aaKnown RBP16.95■□□□□ 0.3
CLN3-201ENST00000333496 ABI2Q9NYB9 513 aaPredicted RBP16.95■□□□□ 0.3
CLN3-201ENST00000333496 IGSF9Q9P2J2 1179 aa16.95■□□□□ 0.3
CLN3-201ENST00000333496 ZNF638Q14966 1978 aaKnown RBP16.94■□□□□ 0.3
CLN3-201ENST00000333496 MYBPHLA2RUH7 354 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 PPP1R3GB7ZBB8 358 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 BIN1O00499 593 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 TACC1O75410 805 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 HAPLN1P10915 354 aaPredicted RBP16.94■□□□□ 0.3
CLN3-201ENST00000333496 TUFMP49411 452 aaKnown RBP16.94■□□□□ 0.3
CLN3-201ENST00000333496 EPHB3P54753 998 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 ENPEPQ07075 957 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 SIGLEC14Q08ET2 396 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 PLD1Q13393 1074 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 TDGQ13569 410 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 HTR4Q13639 388 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 CAMK4Q16566 473 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 IQCEQ6IPM2 695 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 FAM171BQ6P995 826 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 FGF14Q92915 247 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 SEPT5Q99719 369 aaPredicted RBP16.94■□□□□ 0.3
CLN3-201ENST00000333496 RPP25Q9BUL9 199 aaKnown RBP16.94■□□□□ 0.3
CLN3-201ENST00000333496 CRTAC1Q9NQ79 661 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 NXF1Q9UBU9 619 aaKnown RBP16.94■□□□□ 0.3
CLN3-201ENST00000333496 PCDHB5Q9Y5E4 795 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 MYH10P35580 1976 aa16.94■□□□□ 0.3
CLN3-201ENST00000333496 PRR33A8MZF0 331 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 CETN3O15182 167 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PDGFRBP09619 1106 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 FAM163BP0C2L3 166 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 CCNE1P24864 410 aa16.93■□□□□ 0.3
CLN3-201ENST00000333496 PCSK1P29120 753 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms