RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PLEKP08567 350 aaPredicted RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 PSMC3P17980 439 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 TPP2P29144 1249 aaPredicted RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 ATXN3P54252 364 aaPredicted RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 CDH6P55285 790 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 HERVK_113P62684 666 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 PLOD1Q02809 727 aaPredicted RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 OVGP1Q12889 678 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 ANGEL2Q5VTE6 544 aaKnown RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 HORMAD1Q86X24 394 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 DDIASQ8IXT1 998 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 AGBL1Q96MI9 1066 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 KLHL4Q9C0H6 718 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 LACRTQ9GZZ8 138 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 KCNH7Q9NS40 1196 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 KCND1Q9NSA2 647 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 XPO7Q9UIA9 1087 aaKnown RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 SLC13A4Q9UKG4 626 aa12.02□□□□□ -0.49
VPS39-201ENST00000318006 FNDC3AQ9Y2H6 1198 aaKnown RBP12.02□□□□□ -0.49
VPS39-201ENST00000318006 IQCA1LA6NCM1 817 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 VCAM1P19320 739 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 GRB10Q13322 594 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 KYAT1Q16773 422 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 FIGNQ5HY92 759 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 SNX30Q5VWJ9 437 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 PPP2R3CQ969Q6 453 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 PPP1R36Q96LQ0 422 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 UTP6Q9NYH9 597 aaKnown RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 BTBD7Q9P203 1132 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 GRID1Q9ULK0 1009 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 COL5A2P05997 1499 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 AP1G2O75843 785 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 IFNA8P32881 189 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 ACOT2P49753 483 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 CLK1P49759 484 aaKnown RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 FOXD4Q12950 439 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 CHI3L2Q15782 390 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 TRMT5Q32P41 509 aaKnown RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 GJC2Q5T442 439 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 XRRA1Q6P2D8 792 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 TERB1Q8NA31 727 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 ACTRT1Q8TDG2 376 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 ZNF483Q8TF39 744 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 FSD1LQ9BXM9 530 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 MAGEB5Q9BZ81 275 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 GLI1P08151 1106 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 TCN1P20061 433 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 PPARGP37231 505 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 SLC34A1Q06495 639 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 MXD4Q14582 209 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 TTC39BQ5VTQ0 682 aaPredicted RBP12.01□□□□□ -0.49
VPS39-201ENST00000318006 ITPRIPL1Q6GPH6 555 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 C1orf228Q6PIY5 440 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 FRA10AC1Q70Z53 315 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 ZNF786Q8N393 782 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 TRAPPC9Q96Q05 1148 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 DEFB129Q9H1M3 183 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 CNGB3Q9NQW8 809 aa12.01□□□□□ -0.49
VPS39-201ENST00000318006 MSH4O15457 936 aa12□□□□□ -0.49
VPS39-201ENST00000318006 DPEP1P16444 411 aa12□□□□□ -0.49
VPS39-201ENST00000318006 RPS12P25398 132 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 VCPP55072 806 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 ELF3P78545 371 aaPredicted RBP12□□□□□ -0.49
VPS39-201ENST00000318006 NSUN2Q08J23 767 aaKnown RBP eCLIP12□□□□□ -0.49
VPS39-201ENST00000318006 PLA2G4FQ68DD2 849 aa12□□□□□ -0.49
VPS39-201ENST00000318006 SLC13A5Q86YT5 568 aaPredicted RBP12□□□□□ -0.49
VPS39-201ENST00000318006 THEM5Q8N1Q8 247 aa12□□□□□ -0.49
VPS39-201ENST00000318006 AENQ8WTP8 325 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 SYBUQ9NX95 663 aa12□□□□□ -0.49
VPS39-201ENST00000318006 STAP1Q9ULZ2 295 aa12□□□□□ -0.49
VPS39-201ENST00000318006 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12□□□□□ -0.49
VPS39-201ENST00000318006 HNRNPRO43390 633 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 AHCYL1O43865 530 aa12□□□□□ -0.49
VPS39-201ENST00000318006 GMPSP49915 693 aaPredicted RBP12□□□□□ -0.49
VPS39-201ENST00000318006 IMPG1Q17R60 797 aa12□□□□□ -0.49
VPS39-201ENST00000318006 FAM102AQ5T9C2 384 aaPredicted RBP12□□□□□ -0.49
VPS39-201ENST00000318006 RWDD4Q6NW29 188 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 MOXD1Q6UVY6 613 aa12□□□□□ -0.49
VPS39-201ENST00000318006 JADE3Q92613 823 aa12□□□□□ -0.49
VPS39-201ENST00000318006 ARHGEF26Q96DR7 871 aa12□□□□□ -0.49
VPS39-201ENST00000318006 MPP4Q96JB8 637 aa12□□□□□ -0.49
VPS39-201ENST00000318006 GGA3Q9NZ52 723 aa12□□□□□ -0.49
VPS39-201ENST00000318006 CD44P16070 742 aaKnown RBP12□□□□□ -0.49
VPS39-201ENST00000318006 ST3GAL1Q11201 340 aa12□□□□□ -0.49
VPS39-201ENST00000318006 SLC15A2Q16348 729 aa12□□□□□ -0.49
VPS39-201ENST00000318006 PKN1Q16512 942 aa12□□□□□ -0.49
VPS39-201ENST00000318006 WDR72Q3MJ13 1102 aa12□□□□□ -0.49
VPS39-201ENST00000318006 MICU2Q8IYU8 434 aa12□□□□□ -0.49
VPS39-201ENST00000318006 INPP5DQ92835 1189 aa12□□□□□ -0.49
VPS39-201ENST00000318006 KIF12Q96FN5 646 aa12□□□□□ -0.49
VPS39-201ENST00000318006 PRMT6Q96LA8 375 aaPredicted RBP12□□□□□ -0.49
VPS39-201ENST00000318006 RUBCNLQ9H714 662 aa12□□□□□ -0.49
VPS39-201ENST00000318006 KBTBD4Q9NVX7 518 aa12□□□□□ -0.49
VPS39-201ENST00000318006 ITGB1BP2Q9UKP3 347 aa12□□□□□ -0.49
VPS39-201ENST00000318006 CDYLQ9Y232 598 aa12□□□□□ -0.49
VPS39-201ENST00000318006 ADGRA3Q8IWK6 1321 aa12□□□□□ -0.49
VPS39-201ENST00000318006 TMEM247A6NEH6 219 aa12□□□□□ -0.49
VPS39-201ENST00000318006 F8VZ95 297 aa12□□□□□ -0.49
VPS39-201ENST00000318006 APOL1O14791 398 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms