RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SV2BQ7L1I2 683 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CAMK1DQ8IU85 385 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 IQUBQ8NA54 791 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 OR8H1Q8NGG4 311 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 DQX1Q8TE96 717 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PTCD3Q96EY7 689 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF232Q9UNY5 417 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CCDC18Q5T9S5 1454 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PFKFB2O60825 505 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 BCRP11274 1271 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 NR1D1P20393 614 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 HOXC8P31273 242 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 MAPK9P45984 424 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 RAB5CP51148 216 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CYP4F2P78329 520 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CYP4F3Q08477 520 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CSTF3Q12996 717 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 C6orf183Q5T699 404 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 TRIM72Q6ZMU5 477 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 DYMQ7RTS9 669 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 TCP11L2Q8N4U5 519 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SCFD2Q8WU76 684 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PHF12Q96QT6 1004 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CYP3A43Q9HB55 503 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 BTBD7Q9P203 1132 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 HERC5Q9UII4 1024 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CPSF3Q9UKF6 684 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SBNO2Q9Y2G9 1366 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 TYW5A2RUC4 315 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 B3GALNT1O75752 331 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ALBP02768 609 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 GRK3P35626 688 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ADKP55263 362 aaKnown RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 BTG3Q14201 252 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 MAPK6Q16659 721 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CDO1Q16878 200 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PYDC2Q56P42 97 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 C19orf35Q6ZS72 473 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 DSG4Q86SJ6 1040 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ARHGAP12Q8IWW6 846 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 OR6P1Q8NGX9 317 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SPATA16Q9BXB7 569 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 EPB41L5Q9HCM4 733 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 UCKL1Q9NWZ5 548 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CHPF2Q9P2E5 772 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM153AQ9UHL3 310 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF221Q9UK13 617 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PHF20L1A8MW92 1017 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 STX16-NPEPL1H3BU86 382 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 IFRD1O00458 451 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 MED26O95402 600 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SRCP12931 536 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 ENO3P13929 434 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 TNNI1P19237 187 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CLCN2P51788 898 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 TRIP10Q15642 601 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 AGGF1Q8N302 714 aaeCLIP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 NEK7Q8TDX7 302 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 POF1BQ8WVV4 589 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PIGSQ96S52 555 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 LGMNQ99538 433 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 DESI2Q9BSY9 194 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM207AQ9NSI2 230 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 SNX7Q9UNH6 387 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 PCDHGA6Q9Y5G7 932 aa7.95□□□□□ -1.14
LIMCH1-201ENST00000313860 CFAP43Q8NDM7 1665 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 BTBD18B2RXH4 712 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 NEMP1O14524 444 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 COPEO14579 308 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ATP6V1G2O95670 118 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 PGK1P00558 417 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 HCKP08631 526 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 GSTM1P09488 218 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 OGNP20774 298 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 CDK9P50750 372 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 HPCAP84074 193 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 GRB14Q14449 540 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 C21orf62-AS1Q17RA5 79 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 WLSQ5T9L3 541 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 GALNTL5Q7Z4T8 443 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 DHRS1Q96LJ7 313 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 KLHL5Q96PQ7 755 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 DNAJC5BQ9UF47 199 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 CA5BQ9Y2D0 317 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 RAB19A4D1S5 217 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 TTLL8A6PVC2 850 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 RNF113AO15541 343 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 TLR2O60603 784 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 NUDT7P0C024 238 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 PLCG1P19174 1290 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 MAGEA4P43358 317 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 NAMPTP43490 491 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 CBX5P45973 191 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 STAT5BP51692 787 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 COASYQ13057 564 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 QPRTQ15274 297 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 RHEBQ15382 184 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 SMU1Q2TAY7 513 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 C2CD5Q86YS7 1000 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 PPM1KQ8N3J5 372 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms