RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 ASNSP08243 561 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 HSD17B3P37058 310 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 RGS2P41220 211 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 C16orf72Q14CZ0 275 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 SYCP2LQ5T4T6 812 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 ZNF467Q7Z7K2 595 aaPredicted RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 CROCCP3Q8IVE0 287 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 AHI1Q8N157 1196 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MCEEQ96PE7 176 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 QKIQ96PU8 341 aaKnown RBP eCLIP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MRPL39Q9NYK5 338 aaKnown RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 SNX13Q9Y5W8 968 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 SMIM31A0A1B0GVY4 71 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 A0A1W2PQJ5 194 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 KLHL18O94889 574 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 PDK1Q15118 436 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 UGT3A1Q6NUS8 523 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 RSAD1Q9HA92 442 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 HEY2Q9UBP5 337 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 EIF3LQ9Y262 564 aaKnown RBP14.44□□□□□ -0.1
CSPG4-201ENST00000308508 NEDD4P46934 1319 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 USP17L5A8MUK1 530 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 PSTPIP1O43586 416 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 PSMC5P62195 406 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 NR1I3Q14994 352 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MYCBPAPQ8TBZ2 947 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MIEF2Q96C03 454 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 MPP4Q96JB8 637 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 BCS1LQ9Y276 419 aa14.44□□□□□ -0.1
CSPG4-201ENST00000308508 KLHL17Q6TDP4 642 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 LRRC49Q8IUZ0 686 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 STRBPQ96SI9 672 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 EIF2AK1Q9BQI3 630 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 LMTK3Q96Q04 1460 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 MTSS1O43312 755 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 USP11P51784 963 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 ALDH6A1Q02252 535 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 TRMT5Q32P41 509 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 LINC00523Q86TU6 105 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 FBXO40Q9UH90 709 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 TMCC3Q9ULS5 477 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 STON1Q9Y6Q2 735 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 F8W810 466 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 SSTR3P32745 418 aaPredicted RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 FAM9CQ8IZT9 166 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 MYL3P08590 195 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 NUDT18Q6ZVK8 323 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 ADCK2Q7Z695 626 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 TMEM117Q9H0C3 514 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 ZCWPW1Q9H0M4 648 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 RMND5AQ9H871 391 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 TUFT1Q9NNX1 390 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 COPG2Q9UBF2 871 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 FAM58BPP0C7Q3 252 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 FCER1AP12319 257 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 SERPINB5P36952 375 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 CRKLP46109 303 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 CNTN1Q12860 1018 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 ATP1A4Q13733 1029 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 GJB4Q9NTQ9 266 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 SLC30A1Q9Y6M5 507 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 PTCH1Q13635 1447 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 SLC26A4O43511 780 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 SOAT2O75908 522 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 IREB2P48200 963 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 AGAP9Q5VTM2 703 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 PTRHD1Q6GMV3 140 aaKnown RBP14.43□□□□□ -0.1
CSPG4-201ENST00000308508 DPP10Q8N608 796 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 KIF12Q96FN5 646 aa14.43□□□□□ -0.1
CSPG4-201ENST00000308508 IL6P05231 212 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 CYP51A1Q16850 503 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 REXO4Q9GZR2 422 aaKnown RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 FAM192AQ9GZU8 254 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 HPS4Q9NQG7 708 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 MAP3K20Q9NYL2 800 aaKnown RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 MAGEA10P43363 369 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 SHC4Q6S5L8 630 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 BNIPLQ7Z465 357 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 SLC30A5Q8TAD4 765 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 CPA5Q8WXQ8 436 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 TMEM79Q9BSE2 394 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 ALDH8A1Q9H2A2 487 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 ZC3H4Q9UPT8 1303 aaKnown RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 EFNA5P52803 228 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 APOL4Q9BPW4 351 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 STK39Q9UEW8 545 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 CYP4Z1Q86W10 505 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 CENPTQ96BT3 561 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 NARS2Q96I59 477 aaKnown RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 MTRF1O75570 445 aaKnown RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 HSMCR30P0CW71 290 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 GRM4Q14833 912 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 ENKURQ8TC29 256 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 RNFT2Q96EX2 444 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 IRX2Q9BZI1 471 aaPredicted RBP14.42□□□□□ -0.1
CSPG4-201ENST00000308508 RWDD3Q9Y3V2 267 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 ASXL2Q76L83 1435 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 TNFAIP8O95379 198 aa14.42□□□□□ -0.1
CSPG4-201ENST00000308508 ITGAXP20702 1163 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms