RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 PTPRMP28827 1452 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 TARSL2A2RTX5 802 aaKnown RBP18.05■□□□□ 0.48
SHANK1-201ENST00000293441 TTLL13PA6NNM8 815 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 POLBP06746 335 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 CYP11B2P19099 503 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 IL10P22301 178 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 SLC11A2P49281 568 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 DMTNQ08495 405 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 C4orf33Q8N1A6 199 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 DDIT4Q9NX09 232 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 GGT7Q9UJ14 662 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 SUPT20HL2P0C7V6 817 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 ARP10275 920 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 EPHB2P29323 1055 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 RGS4P49798 205 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 ABCE1P61221 599 aaKnown RBP18.05■□□□□ 0.48
SHANK1-201ENST00000293441 KLHDC7AQ5VTJ3 777 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 FAM71DQ8N9W8 422 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 TFB1MQ8WVM0 346 aaKnown RBP18.05■□□□□ 0.48
SHANK1-201ENST00000293441 TMA16Q96EY4 203 aaKnown RBP18.05■□□□□ 0.48
SHANK1-201ENST00000293441 MROH8Q9H579 483 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 NPHS2Q9NP85 383 aa18.05■□□□□ 0.48
SHANK1-201ENST00000293441 PTK7Q13308 1070 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 SPATA16Q9BXB7 569 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 MARCOQ9UEW3 520 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 CTDNEP1O95476 244 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 ZNF286BP0CG31 522 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 MBL2P11226 248 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 C3orf62Q6ZUJ4 267 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 RNF168Q8IYW5 571 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 PSMC3IPQ9P2W1 217 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 CYB561D2O14569 222 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 ICA1LQ8NDH6 482 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 DPF3Q92784 378 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 SLC25A13Q9UJS0 675 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 ZC3H13Q5T200 1668 aaKnown RBP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 CFAP99D6REC4 459 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 PDHA1P08559 390 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 GCLCP48506 637 aaPredicted RBP18.04■□□□□ 0.48
SHANK1-201ENST00000293441 SERPINB9P50453 376 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 TGFB2P61812 414 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 GRIN1Q05586 938 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 STX3Q13277 289 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 ACOT1Q86TX2 421 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 FOXP2O15409 715 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 SOX11P35716 441 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 GUCY1A3Q02108 690 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 WDR48Q8TAF3 677 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 CALML6Q8TD86 181 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 FBXO32Q969P5 355 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 MKNK1Q9BUB5 465 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 MTFR1LQ9H019 292 aa18.04■□□□□ 0.48
SHANK1-201ENST00000293441 MED24O75448 989 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 FDPSP14324 419 aaKnown RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 ACO1P21399 889 aaKnown RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 OR9Q1Q8NGQ5 310 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 TMEM161AQ9NX61 479 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 CRLS1Q9UJA2 301 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 ATP11BQ9Y2G3 1177 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 RIMS1Q86UR5 1692 aaKnown RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 RHOBTB1O94844 696 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 RAP1GAPP47736 663 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 NAA30Q147X3 362 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 TMEM132BQ14DG7 1078 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 RPRD1AQ96P16 312 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 ASS1P00966 412 aaKnown RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 ERFP50548 548 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 AARS2Q5JTZ9 985 aaKnown RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 DEFB128Q7Z7B8 93 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 TRIM48Q8IWZ4 208 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 PXMP2Q9NR77 195 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 TRAF3IP3Q9Y228 551 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 P4HA2O15460 535 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 PMPCBO75439 489 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 DAB2P98082 770 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 GRAMD1AQ96CP6 724 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 C17orf75Q9HAS0 396 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 BFSP2Q13515 415 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 MPZL3Q6UWV2 235 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 RASGRP2Q7LDG7 609 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 MIB1Q86YT6 1006 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 ARRDC4Q8NCT1 418 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 PJA2O43164 708 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 MZF1P28698 734 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 SPRP35270 261 aaPredicted RBP18.03■□□□□ 0.48
SHANK1-201ENST00000293441 VSNL1P62760 191 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 CARNMT1Q8N4J0 409 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 NSMCE4AQ9NXX6 385 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 HPS5Q9UPZ3 1129 aa18.03■□□□□ 0.48
SHANK1-201ENST00000293441 OGTO15294 1046 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 NAMPTP43490 491 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 CCDC157Q569K6 752 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 ACAD10Q6JQN1 1059 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 HPS4Q9NQG7 708 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 CASP4P49662 377 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 B4GALNT2Q8NHY0 566 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 KIF2CQ99661 725 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 GOLPH3Q9H4A6 298 aa18.02■□□□□ 0.48
SHANK1-201ENST00000293441 STARD7Q9NQZ5 370 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms