RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 SEMA4AQ9H3S1 761 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 NXF3Q9H4D5 531 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 SLC5A4Q9NY91 659 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 RSPH14Q9UHP6 348 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 NOVA2Q9UNW9 492 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 WDR81Q562E7 1941 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 ACSL3O95573 720 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 MCF2P10911 925 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 SLC1A1P43005 524 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 RAD23BP54727 409 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 C1QBPQ07021 282 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 PTP4A2Q12974 167 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 PLEKHA7Q6IQ23 1121 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 CAPS2Q9BXY5 557 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 METTL5Q9NRN9 209 aaKnown RBP12.15□□□□□ -0.46
CUX1-202ENST00000292538 MORF4L1Q9UBU8 362 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 IP6K2Q9UHH9 426 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 ZNF148Q9UQR1 794 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 PASKQ96RG2 1323 aa12.15□□□□□ -0.46
CUX1-202ENST00000292538 FAM187AA6NFU0 413 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 CALB1P05937 261 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 C6orf222P0C671 652 aaPredicted RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 PMS2P54278 862 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 SLC29A2Q14542 456 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 FAM47CQ5HY64 1035 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 IQSEC1Q6DN90 963 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 MFSD7Q6UXD7 560 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 CAPN12Q6ZSI9 719 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ZNF365Q70YC5 407 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ACOT1Q86TX2 421 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 MSL3Q8N5Y2 521 aaKnown RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 RAPGEF5Q92565 580 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 HSPH1Q92598 858 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 TMEM176AQ96HP8 235 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 GCOM2Q9BZD3 368 aaPredicted RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 GOLGA2P5Q9HBQ8 144 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 TUBGCP4Q9UGJ1 667 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 DCDC2CA8MYV0 355 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ZSCAN5DPP0CG00 497 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 HSPA6P17066 643 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ACTN2P35609 894 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ZNF132P52740 706 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 MCCD1P59942 119 aaPredicted RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 PTPN11Q06124 597 aaPredicted RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 ZNF844Q08AG5 666 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 HIC1Q14526 733 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 SIX1Q15475 284 aaPredicted RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 PPP2R5EQ16537 467 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 SCYL2Q6P3W7 929 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 OR6B3Q8NGW1 331 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ZMAT2Q96NC0 199 aaKnown RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 CACNG4Q9UBN1 327 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 MTRF1LQ9UGC7 380 aaKnown RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 TMEM191CA6NGB0 347 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 PODXLO00592 558 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 TNPO2O14787 897 aaKnown RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 MICAL2O94851 1124 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 CTSHP09668 335 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ETS1P14921 441 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ATP11AP98196 1134 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 ENPEPQ07075 957 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 NFX1Q12986 1120 aaKnown RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 CLUL1Q15846 466 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 FAM102AQ5T9C2 384 aaPredicted RBP12.14□□□□□ -0.47
CUX1-202ENST00000292538 DENND2CQ68D51 928 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 OR6B2Q6IFH4 312 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 SLC4A11Q8NBS3 891 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 TMEM40Q8WWA1 233 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 MIS12Q9H081 205 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 AP5M1Q9H0R1 490 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 PRDM4Q9UKN5 801 aa12.14□□□□□ -0.47
CUX1-202ENST00000292538 HTTP42858 3142 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 ARID2Q68CP9 1835 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 A0A1B0GUA9 196 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 ERBB2P04626 1255 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 P4HA1P13674 534 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 NR1D1P20393 614 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 CETN2P41208 172 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 YWHAEP62258 255 aaKnown RBP12.13□□□□□ -0.47
CUX1-202ENST00000292538 ZNF252P-AS1Q0IIN9 211 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 MAP2K5Q13163 448 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 MFSD10Q14728 455 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 TCEAL1Q15170 157 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 SYCP2LQ5T4T6 812 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 SH3PXD2AQ5TCZ1 1133 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 ZDHHC24Q6UX98 284 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 MRRFQ96E11 262 aaKnown RBP12.13□□□□□ -0.47
CUX1-202ENST00000292538 SH3GL2Q99962 352 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 RNF39Q9H2S5 420 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 GRHL1Q9NZI5 618 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 FSCN2O14926 492 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 MED7O43513 233 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 MAGOHP61326 146 aaKnown RBP12.13□□□□□ -0.47
CUX1-202ENST00000292538 RBP5P82980 135 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 TAF5Q15542 800 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 ATP6V1G3Q96LB4 118 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 CALN1Q9BXU9 219 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 PPANQ9NQ55 473 aaKnown RBP12.13□□□□□ -0.47
CUX1-202ENST00000292538 PCYOX1Q9UHG3 505 aa12.13□□□□□ -0.47
CUX1-202ENST00000292538 CNTN6Q9UQ52 1028 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms