RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MLH1P40692 756 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 ALDH7A1P49419 539 aaKnown RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 CUL1Q13616 776 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 DEFB128Q7Z7B8 93 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 RCOR2Q8IZ40 523 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TAB3Q8N5C8 712 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 FBXL18Q96ME1 805 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TSPAN18Q96SJ8 248 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 C16orf70Q9BSU1 422 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TSPYL2Q9H2G4 693 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 DHX35Q9H5Z1 703 aaKnown RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 PRLRP16471 622 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 GPD1P21695 349 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 SCNN1GP51170 649 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 EFHC2Q5JST6 749 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 MORN1Q5T089 497 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 PAPD7Q5XG87 772 aaKnown RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 OTUD6BQ8N6M0 293 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 LRRC52Q8N7C0 313 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 KREMEN1Q96MU8 473 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 METTL5Q9NRN9 209 aaKnown RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TMEM39AQ9NV64 488 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 GOLGA6CA6NDK9 693 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 AP1G2O75843 785 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 GOLGA6DP0CG33 693 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 CACNB2Q08289 660 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 NAA30Q147X3 362 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 CASC4Q6P4E1 433 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 ZSWIM2Q8NEG5 633 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 FAM76AQ8TAV0 307 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 SMYD3Q9H7B4 428 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 VPS37BQ9H9H4 285 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 ACP6Q9NPH0 428 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 RNF19AQ9NV58 838 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 GOLGA6AQ9NYA3 693 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 ANAPC5Q9UJX4 755 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 PI4K2BG5E9Z4 385 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 RAG1P15918 1043 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TM4SF4P48230 202 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 NME3Q13232 169 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 MKRN4PQ13434 485 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 BSPRYQ5W0U4 402 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 CDCA2Q69YH5 1023 aaPredicted RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 WHAMMQ8TF30 809 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 COG1Q8WTW3 980 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TSNARE1Q96NA8 513 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 FTHL17Q9BXU8 183 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 DONSONQ9NYP3 566 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 TSPAN16Q9UKR8 245 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 COQ4Q9Y3A0 265 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 IPPQ9Y573 584 aa12.22□□□□□ -0.45
VPS4A-201ENST00000254950 GOLGB1Q14789 3259 aaKnown RBP12.22□□□□□ -0.45
VPS4A-201ENST00000254950 A0A1B0GUA9 196 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 ATP8B1O43520 1251 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 CLCN6P51797 869 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 ACLYP53396 1101 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 PURAQ00577 322 aaKnown RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 VEPH1Q14D04 833 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 DNAJC21Q5F1R6 531 aaKnown RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 EMBQ6PCB8 327 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 PPP1R21Q6ZMI0 780 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 ZC3H3Q8IXZ2 948 aaKnown RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 TMEM169Q96HH4 297 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 SELENOSQ9BQE4 189 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 SYT15Q9BQS2 421 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 NFKBIZQ9BYH8 718 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 AVENQ9NQS1 362 aaPredicted RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 DDX43Q9NXZ2 648 aaKnown RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 GIT1Q9Y2X7 761 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 FAM187AA6NFU0 413 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 PMM2O15305 246 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 BCAR1P56945 870 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 GJA9P57773 515 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 ELAVL2Q12926 359 aaKnown RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 TRIP13Q15645 432 aaPredicted RBP12.21□□□□□ -0.45
VPS4A-201ENST00000254950 FBXO38Q6PIJ6 1188 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 UNC93AQ86WB7 457 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 SH3TC2Q8TF17 1288 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 HASPINQ8TF76 798 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 P3H4Q92791 437 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 FMO2Q99518 471 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 ZSWIM1Q9BR11 485 aa12.21□□□□□ -0.45
VPS4A-201ENST00000254950 QSER1Q2KHR3 1735 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 RBM47A0AV96 593 aaKnown RBP12.21□□□□□ -0.46
VPS4A-201ENST00000254950 POU5F1Q01860 360 aaKnown RBP12.21□□□□□ -0.46
VPS4A-201ENST00000254950 UAP1Q16222 522 aaPredicted RBP12.21□□□□□ -0.46
VPS4A-201ENST00000254950 FAM187BQ17R55 369 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 LNX1Q8TBB1 728 aaPredicted RBP12.21□□□□□ -0.46
VPS4A-201ENST00000254950 HELQQ8TDG4 1101 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 TRIB2Q92519 343 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 SENP8Q96LD8 212 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 LBHD1Q9BQE6 289 aaPredicted RBP12.21□□□□□ -0.46
VPS4A-201ENST00000254950 GTF2IRD1Q9UHL9 959 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 PADI3Q9ULW8 664 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 SNX24Q9Y343 169 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 HEY1Q9Y5J3 304 aa12.21□□□□□ -0.46
VPS4A-201ENST00000254950 TYW5A2RUC4 315 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 SEC31AO94979 1220 aaKnown RBP12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ALDH2P05091 517 aa12.2□□□□□ -0.46
VPS4A-201ENST00000254950 ZNF865P0CJ78 1059 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms