RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 ZSCAN5DPP0CG00 497 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 PECAM1P16284 738 aaPredicted RBP17.32■□□□□ 0.36
HOXD3-201ENST00000249440 ALDH5A1P51649 535 aaPredicted RBP17.32■□□□□ 0.36
HOXD3-201ENST00000249440 VCPP55072 806 aaKnown RBP17.32■□□□□ 0.36
HOXD3-201ENST00000249440 TRPC3Q13507 836 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 SURF1Q15526 300 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 ZKSCAN8Q15776 578 aaPredicted RBP17.32■□□□□ 0.36
HOXD3-201ENST00000249440 PPP1R15BQ5SWA1 713 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 SCARA3Q6AZY7 606 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 GPAT2Q6NUI2 795 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 ZBTB33Q86T24 672 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 TBC1D1Q86TI0 1168 aaPredicted RBP17.32■□□□□ 0.36
HOXD3-201ENST00000249440 NIPA2Q8N8Q9 360 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 PRPF31Q8WWY3 499 aaKnown RBP17.32■□□□□ 0.36
HOXD3-201ENST00000249440 PCYT2Q99447 389 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 KLHL14Q9P2G3 628 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 PRKAG3Q9UGI9 489 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 GGT7Q9UJ14 662 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 PCDHGC3Q9UN70 934 aa17.32■□□□□ 0.36
HOXD3-201ENST00000249440 LRRD1A4D1F6 860 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 DDNO94850 711 aaPredicted RBP17.31■□□□□ 0.36
HOXD3-201ENST00000249440 ATP6V1G2O95670 118 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 CDH5P33151 784 aaPredicted RBP17.31■□□□□ 0.36
HOXD3-201ENST00000249440 PLCB3Q01970 1234 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 OGDHQ02218 1023 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 MTFR1Q15390 333 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 OASLQ15646 514 aaKnown RBP17.31■□□□□ 0.36
HOXD3-201ENST00000249440 GPR162Q16538 588 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 DLK2Q6UY11 383 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 TRABD2AQ86V40 505 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 APOBEC3FQ8IUX4 373 aaKnown RBP17.31■□□□□ 0.36
HOXD3-201ENST00000249440 NKD2Q969F2 451 aaPredicted RBP17.31■□□□□ 0.36
HOXD3-201ENST00000249440 KLRG1Q96E93 195 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 RXFP1Q9HBX9 757 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 STRIP2Q9ULQ0 834 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 AGAP1Q9UPQ3 857 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.31■□□□□ 0.36
HOXD3-201ENST00000249440 TTLL13PA6NNM8 815 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 ETS1P14921 441 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 CDKN2BP42772 138 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 BNIP1Q12981 228 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 NEDD9Q14511 834 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 CENPUQ71F23 418 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 CEP57Q86XR8 500 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 TCP11Q8WWU5 503 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 PITPNM3Q9BZ71 974 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 SHOC2Q9UQ13 582 aa17.31■□□□□ 0.36
HOXD3-201ENST00000249440 OGTO15294 1046 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 GCAP28676 217 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 SLC18A1P54219 525 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 RIPK1Q13546 671 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 WDR72Q3MJ13 1102 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PREPLQ4J6C6 727 aaPredicted RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 WLSQ5T9L3 541 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 ANGEL2Q5VTE6 544 aaKnown RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 IER5Q5VY09 327 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 C9orf131Q5VYM1 1079 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 TXNRD3NBQ6F5E7 133 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 SMYD5Q6GMV2 418 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 POLNQ7Z5Q5 900 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PNMA8AQ86V59 439 aaPredicted RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 WDTC1Q8N5D0 677 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 ACO2Q99798 780 aaKnown RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 TACO1Q9BSH4 297 aaKnown RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 ECT2Q9H8V3 914 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PPCSQ9HAB8 311 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PCDH9Q9HC56 1237 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 SENP1Q9P0U3 644 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 AFG3L2Q9Y4W6 797 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PPME1Q9Y570 386 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 POC1B-GALNT4F8VUJ3 575 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 SGK1O00141 431 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 ALOX15BO15296 676 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 TAC1P20366 129 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 POLR2BP30876 1174 aaKnown RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 TCF7P36402 384 aaPredicted RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 NCALDP61601 193 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 MAPK6Q16659 721 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 RNASEH2BQ5TBB1 312 aaKnown RBP17.3■□□□□ 0.36
HOXD3-201ENST00000249440 RNF43Q68DV7 783 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PCGF5Q86SE9 256 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 ZBED8Q8IZ13 594 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 SEPT1Q8WYJ6 367 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 VPS37BQ9H9H4 285 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 NOD2Q9HC29 1040 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 BAIAP2L1Q9UHR4 511 aa17.3■□□□□ 0.36
HOXD3-201ENST00000249440 PRPF4O43172 522 aaKnown RBP eCLIP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 ASMTLO95671 621 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 WEE2P0C1S8 567 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 KRT15P19012 456 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 GSCP56915 257 aaPredicted RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 ACVR2BQ13705 512 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 MXD4Q14582 209 aaPredicted RBP17.29■□□□□ 0.36
HOXD3-201ENST00000249440 CCDC142Q17RM4 750 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 ZBTB8OSQ8IWT0 167 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 FITM2Q8N6M3 262 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 HAUS1Q96CS2 278 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 FAM167AQ96KS9 214 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 SMC6Q96SB8 1091 aa17.29■□□□□ 0.36
HOXD3-201ENST00000249440 PAIP2Q9BPZ3 127 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms