RNA–Protein interactions for RNA: ENST00000046640.7

CTNS-201, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTNS, Length 2,866 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-201ENST00000046640 PTP4A2Q12974 167 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 DUOXA2Q1HG44 320 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 SMTNL2Q2TAL5 461 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 EFCAB12Q6NXP0 572 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 ZBTB8OSQ8IWT0 167 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 FEZF2Q8TBJ5 459 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 TMEM134Q9H6X4 195 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 ECT2Q9H8V3 914 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 MRPL47Q9HD33 250 aaKnown RBP13.89□□□□□ -0.19
CTNS-201ENST00000046640 KCNG1Q9UIX4 513 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 ANAPC5Q9UJX4 755 aa13.89□□□□□ -0.19
CTNS-201ENST00000046640 ASAP2O43150 1006 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 FAM189A1O60320 539 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 CYP2C8P10632 490 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 TBXAS1P24557 533 aaPredicted RBP13.88□□□□□ -0.19
CTNS-201ENST00000046640 SLC1A1P43005 524 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 KCTD2Q14681 263 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 NAA25Q14CX7 972 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 ZNF699Q32M78 642 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 KCNT1Q5JUK3 1230 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 FAM47EQ6ZV65 393 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 ZNF365Q70YC5 407 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 TAOK1Q7L7X3 1001 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 TRIM11Q96F44 468 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 FAM81BQ96LP2 452 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 FGD4Q96M96 766 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 PARVAQ9NVD7 372 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 RNF181Q9P0P0 153 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 MGRN1O60291 552 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 GAS8O95995 478 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 PLCB3Q01970 1234 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 WDR72Q3MJ13 1102 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 PLEKHA7Q6IQ23 1121 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 CYP4F22Q6NT55 531 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 MFSD7Q6UXD7 560 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 SRRM1Q8IYB3 904 aaKnown RBP13.88□□□□□ -0.19
CTNS-201ENST00000046640 CYP4X1Q8N118 509 aa13.88□□□□□ -0.19
CTNS-201ENST00000046640 C12orf50Q8NA57 414 aaPredicted RBP13.88□□□□□ -0.19
CTNS-201ENST00000046640 FHDC1Q9C0D6 1143 aaPredicted RBP13.88□□□□□ -0.19
CTNS-201ENST00000046640 IGF2BP3O00425 579 aaKnown RBP eCLIP13.87□□□□□ -0.19
CTNS-201ENST00000046640 OGTO15294 1046 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 SKAP2O75563 359 aaPredicted RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 MYCNP04198 464 aaPredicted RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 KRT1P04264 644 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 MMP8P22894 467 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 IVDP26440 423 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 BRCA1P38398 1863 aaKnown RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 ZNF252P-AS1Q0IIN9 211 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 MPP2Q14168 576 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 SLMAPQ14BN4 828 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 CELF3Q5SZQ8 465 aaKnown RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 ATF7IP2Q5U623 682 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 IER5Q5VY09 327 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 DNAJC24Q6P3W2 148 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 WDTC1Q8N5D0 677 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 ATL2Q8NHH9 583 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 SNF8Q96H20 258 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 CPB2Q96IY4 423 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 MMP19Q99542 508 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 NSRP1Q9H0G5 558 aaKnown RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 ZWILCHQ9H900 591 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 RNF19AQ9NV58 838 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 ZNF148Q9UQR1 794 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 PPP2R3BQ9Y5P8 575 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 SNX3O60493 162 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 GHRP10912 638 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 IREB2P48200 963 aaKnown RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 NFX1Q12986 1120 aaKnown RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 DENND1BQ6P3S1 775 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 PHF13Q86YI8 300 aaPredicted RBP13.87□□□□□ -0.19
CTNS-201ENST00000046640 WDR49Q8IV35 697 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 EMC1Q8N766 993 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 DNPEPQ9ULA0 475 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 GINS2Q9Y248 185 aa13.87□□□□□ -0.19
CTNS-201ENST00000046640 LRRD1A4D1F6 860 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 ITGBL1O95965 494 aaPredicted RBP13.86□□□□□ -0.19
CTNS-201ENST00000046640 IFNB1P01574 187 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 BRAFP15056 766 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 EFNA5P52803 228 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 LACTBP83111 547 aaPredicted RBP13.86□□□□□ -0.19
CTNS-201ENST00000046640 WLSQ5T9L3 541 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 ZPBP2Q6X784 338 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 ERICH1Q86X53 443 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 NIF3L1Q9GZT8 377 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 HOMER3Q9NSC5 361 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 CPSF3Q9UKF6 684 aaKnown RBP13.86□□□□□ -0.19
CTNS-201ENST00000046640 SPAG7O75391 227 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 NFICP08651 508 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 HOXC6P09630 235 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 TGFB3P10600 412 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 ABCD1P33897 745 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 KLF1Q13351 362 aaPredicted RBP13.86□□□□□ -0.19
CTNS-201ENST00000046640 P3H1Q32P28 736 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 IZUMO3Q5VZ72 239 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 AGAP11Q8TF27 550 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 KLHL29Q96CT2 875 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 HMGXB4Q9UGU5 601 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 SLC12A4Q9UP95 1085 aa13.86□□□□□ -0.19
CTNS-201ENST00000046640 USP15Q9Y4E8 981 aaPredicted RBP13.86□□□□□ -0.19
CTNS-201ENST00000046640 SCINQ9Y6U3 715 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms