RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SYTL5Q8TDW5 730 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CYGBQ8WWM9 190 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NCLNQ969V3 563 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZFYVE19Q96K21 471 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PRRG3Q9BZD7 231 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF556Q9HAH1 456 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 HAO1Q9UJM8 370 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NEU2Q9Y3R4 380 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 USP32Q8NFA0 1604 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 HNRNPCL2B2RXH8 293 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ATP9BO43861 1147 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 IFNA16P05015 189 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 HNRNPH3P31942 346 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ADCY1Q08828 1119 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PACRGLQ8N7B6 248 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 GIPC3Q8TF64 312 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 APOPT1Q96IL0 206 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CNDP1Q96KN2 507 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ILKAPQ9H0C8 392 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SPATA7Q9P0W8 599 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NEURL4Q96JN8 1562 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NR3C1P04150 777 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ANPEPP15144 967 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PFKFB3Q16875 520 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF790Q6PG37 636 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 P3H2Q8IVL5 708 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KCTD6Q8NC69 237 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TMCO6Q96DC7 493 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CEP170P1Q96L14 293 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PLIN2Q99541 437 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 STK39Q9UEW8 545 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 BTBD19C9JJ37 291 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PDE8AO60658 829 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZCCHC18P0CG32 403 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PIK3R1P27986 724 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TALDO1P37837 337 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KCNH2Q12809 1159 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TRAF3Q13114 568 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 BICRALQ6AI39 1079 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 FAM45BPQ6NSW5 357 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 BBS7Q8IWZ6 715 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SCFD2Q8WU76 684 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 RORBQ92753 470 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 DPF2Q92785 391 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZSWIM1Q9BR11 485 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZBTB3Q9H5J0 574 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NOL6Q9H6R4 1146 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TUFT1Q9NNX1 390 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KPNA3O00505 521 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 VPS4BO75351 444 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PIK3CAP42336 1068 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CYP4A11Q02928 519 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KNOP1Q1ED39 458 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CYP4A22Q5TCH4 519 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 UNC5CLQ8IV45 518 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM9Q9C026 710 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SUGCTQ9HAC7 445 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PRDM11Q9NQV5 511 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 DMGDHQ9UI17 866 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PLEKHG3A1L390 1219 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 GDF11O95390 407 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 LYNP07948 512 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 RXRAP19793 462 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 MUTP22033 750 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ERP29P30040 261 aaKnown RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ATXN3P54252 364 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KCNMA1Q12791 1236 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 BNIP2Q12982 314 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 BFSP2Q13515 415 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NR1D2Q14995 579 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SPATS1Q496A3 300 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 COBLL1Q53SF7 1204 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TTBK2Q6IQ55 1244 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZBTB49Q6ZSB9 765 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NLRX1Q86UT6 975 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NLRP10Q86W26 655 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ZBTB8OSQ8IWT0 167 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SPICE1Q8N0Z3 855 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 AGPAT1Q99943 283 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 CHID1Q9BWS9 393 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PNPLA8Q9NP80 782 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ING3Q9NXR8 418 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ANAPC7Q9UJX3 599 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 KIAA1210Q9ULL0 1709 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TIMM44O43615 452 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 FGFR4P22455 802 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ADSSP30520 456 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PTK7Q13308 1070 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SLC10A5Q5PT55 438 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.87□□□□□ -1.63
SCN1A-220ENST00000641603 EYA1Q99502 592 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 TMEM79Q9BSE2 394 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 NUP85Q9BW27 656 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 MKLN1Q9UL63 735 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 ING4Q9UNL4 249 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 BCORL1Q5H9F3 1711 aa4.87□□□□□ -1.63
SCN1A-220ENST00000641603 PRDX6P30041 224 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PIGHQ14442 188 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 XXYLT1Q8NBI6 393 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TADA1Q96BN2 335 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms