RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 WNT8AQ9H1J5 351 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 WDCPQ9H6R7 721 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ADA2Q9NZK5 511 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CRYL1Q9Y2S2 319 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 NPC1L1Q9UHC9 1359 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 EVPLLA8MZ36 301 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 UBE2Q2LH0YL09 131 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 TLL1O43897 1013 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CLTAP09496 248 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 POLR2EP19388 210 aaKnown RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 HOXC12P31275 282 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CTNNB1P35222 781 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ATP2C1P98194 919 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ALDH6A1Q02252 535 aaKnown RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 MRPL28Q13084 256 aaKnown RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 GNA13Q14344 377 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PDK1Q15118 436 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 TEAD4Q15561 434 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 DEPDC1Q5TB30 811 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PLA2G4FQ68DD2 849 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 HORMAD1Q86X24 394 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 RHOT1Q8IXI2 618 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 FAM151AQ8WW52 585 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ELMO2Q96JJ3 720 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 FBXO44Q9H4M3 255 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 OGFRQ9NZT2 677 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ATP9BO43861 1147 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 DIAPH2O60879 1101 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PGK2P07205 417 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 LHX1P48742 406 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PIGHQ14442 188 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PI16Q6UXB8 463 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 FAM9CQ8IZT9 166 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 C1orf131Q8NDD1 294 aaKnown RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 TTLL11Q8NHH1 800 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 LRRC46Q96FV0 321 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ABI3Q9P2A4 366 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 F5H423 210 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PRKAB2O43741 272 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CCDC130P13994 396 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ITGAXP20702 1163 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 AKAP5P24588 427 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 SERPINB10P48595 397 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 RENBPP51606 427 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 BAATQ14032 418 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 COMMD2Q86X83 199 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 RAD54LQ92698 747 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 TMEM47Q9BQJ4 181 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CYP4F11Q9HBI6 524 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 MRPL17Q9NRX2 175 aaKnown RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 AHSPQ9NZD4 102 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CYTH3O43739 400 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 CYP2A6P11509 494 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 MSH3P20585 1137 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TYK2P29597 1187 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 GPS1Q13098 491 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 HHIPL2Q6UWX4 724 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 RD3Q7Z3Z2 195 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 FGD2Q7Z6J4 655 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM69Q86WT6 500 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 GAS2L3Q86XJ1 694 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF614Q8N883 585 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 PRRG4Q9BZD6 226 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 NEK6Q9HC98 313 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 XPNPEP3Q9NQH7 507 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TUBE1Q9UJT0 475 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 ANAPC2Q9UJX6 822 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 CLIC4Q9Y696 253 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 RTN3O95197 1032 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 AMD1P17707 334 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 SNRPFP62306 86 aaKnown RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 EMC2Q15006 297 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 ANGPT1Q15389 498 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 POMGNT2Q8NAT1 580 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF564Q8TBZ8 553 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 SAAL1Q96ER3 474 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM237Q96Q45 408 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TESK2Q96S53 571 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 CARD14Q9BXL6 1004 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 SPG21Q9NZD8 308 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TRMT6Q9UJA5 497 aaKnown RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 VPS28Q9UK41 221 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 POLR1DQ9Y2S0 133 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 PCDHB11Q9Y5F2 797 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 PCDHA13Q9Y5I0 950 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 NUDT14O95848 222 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 GPR1P46091 355 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 ACTR2P61160 394 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 PFKFB3Q16875 520 aaPredicted RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 NBPF9Q3BBW0 867 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 HPDLQ96IR7 371 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 TACO1Q9BSH4 297 aaKnown RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 WWOXQ9NZC7 414 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 BAZ2BQ9UIF8 2168 aaKnown RBP6.4□□□□□ -1.39
SCN1A-217ENST00000637988 PCDHGB3Q9Y5G1 929 aa6.4□□□□□ -1.39
SCN1A-217ENST00000637988 ZMYM2Q9UBW7 1377 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CDHR2Q9BYE9 1310 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 FGF19O95750 216 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 CHRM3P20309 590 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms