RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 CD302Q8IX05 232 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 FAM126BQ8IXS8 530 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 LINC01465Q8N7H1 131 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 WNT8BQ93098 351 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 INO80BQ9C086 356 aaPredicted RBP19.54■□□□□ 0.72
CLN3-263ENST00000637871 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.54■□□□□ 0.726e-9■■■■■ 134.6
CLN3-263ENST00000637871 NUB1Q9Y5A7 615 aa19.54■□□□□ 0.72
CLN3-263ENST00000637871 PHF2O75151 1096 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 SYF2O95926 243 aaKnown RBP19.53■□□□□ 0.72
CLN3-263ENST00000637871 CYP2C9P11712 490 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 HSPA9P38646 679 aaKnown RBP19.53■□□□□ 0.72
CLN3-263ENST00000637871 PTGISQ16647 500 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 TMEM132AQ24JP5 1023 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 ZBTB41Q5SVQ8 909 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 CFAP58Q5T655 872 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 DCAF12L1Q5VU92 463 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 MON1BQ7L1V2 547 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 ZNF771Q7L3S4 317 aaPredicted RBP19.53■□□□□ 0.72
CLN3-263ENST00000637871 ZBTB33Q86T24 672 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 SESTD1Q86VW0 696 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 NT5DC4Q86YG4 428 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 ALG3Q92685 438 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 SH3GL2Q99962 352 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 DDX47Q9H0S4 455 aaKnown RBP19.53■□□□□ 0.72
CLN3-263ENST00000637871 ASB7Q9H672 318 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 VPS18Q9P253 973 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 PCYOX1Q9UHG3 505 aa19.53■□□□□ 0.72
CLN3-263ENST00000637871 NRCAMQ92823 1304 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 EVPLQ92817 2033 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 HARSP12081 509 aaKnown RBP19.52■□□□□ 0.72
CLN3-263ENST00000637871 CAPN2P17655 700 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 ATICP31939 592 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 MAN1A1P33908 653 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 NOMO3P69849 1222 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 ADAM17P78536 824 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 TAP1Q03518 808 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 CYP1B1Q16678 543 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 TTC39CQ8N584 583 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 NLRP4Q96MN2 994 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 PARP2Q9UGN5 583 aa19.52■□□□□ 0.72
CLN3-263ENST00000637871 RRN3P2A6NIE6 340 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 RNF40O75150 1001 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 CALB1P05937 261 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 GGCXP38435 758 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 HLTFQ14527 1009 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-263ENST00000637871 PCBP1Q15365 356 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-263ENST00000637871 MTHFD1LQ6UB35 978 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 LRIG3Q6UXM1 1119 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 ZNF410Q86VK4 478 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 GSPT2Q8IYD1 628 aaKnown RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 IQCKQ8N0W5 287 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 GADD45GIP1Q8TAE8 222 aaPredicted RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 FAM49AQ9H0Q0 323 aaPredicted RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 ACP6Q9NPH0 428 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 HOMER3Q9NSC5 361 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 ADAM22Q9P0K1 906 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 ANAPC7Q9UJX3 599 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 FAN1Q9Y2M0 1017 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 CEP83Q9Y592 693 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 TMEM110-MUSTN1A8MSY1 372 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 THAP12O43422 761 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 TNFSF9P41273 254 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 FNTAP49354 379 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 CLCN3P51790 818 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 DR1Q01658 176 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 FAAP100Q0VG06 881 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 NAA35Q5VZE5 725 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 SPOPLQ6IQ16 392 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 PLEKHA7Q6IQ23 1121 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 SLC13A5Q86YT5 568 aaPredicted RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 C12orf50Q8NA57 414 aaPredicted RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 ZNF606Q8WXB4 792 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 CYFIP2Q96F07 1278 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 CDT1Q9H211 546 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 PARVAQ9NVD7 372 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 AMACRQ9UHK6 382 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 FEZ2Q9UHY8 353 aaPredicted RBP19.51■□□□□ 0.71
CLN3-263ENST00000637871 PCDHGC3Q9UN70 934 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 NOD1Q9Y239 953 aa19.51■□□□□ 0.71
CLN3-263ENST00000637871 AGPSO00116 658 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 MED7O43513 233 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 PROSCO94903 275 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 CD4P01730 458 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 ITGA4P13612 1032 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 P4HA1P13674 534 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 EIF4BP23588 611 aaKnown RBP19.5■□□□□ 0.71
CLN3-263ENST00000637871 CETN2P41208 172 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 PTPN11Q06124 597 aaPredicted RBP19.5■□□□□ 0.71
CLN3-263ENST00000637871 ANKRD33Q7Z3H0 272 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 TMEM35BQ8NCS4 154 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 PPP1R16BQ96T49 567 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 ERP44Q9BS26 406 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 VRTNQ9H8Y1 702 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 IFT122Q9HBG6 1241 aa19.5■□□□□ 0.71
CLN3-263ENST00000637871 TNRC18O15417 2968 aaPredicted RBP19.5■□□□□ 0.71
CLN3-263ENST00000637871 MBLAC1A4D2B0 266 aaPredicted RBP19.49■□□□□ 0.71
CLN3-263ENST00000637871 TTLL13PA6NNM8 815 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 FSCN2O14926 492 aa19.49■□□□□ 0.71
CLN3-263ENST00000637871 PSTPIP1O43586 416 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms