RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 RFPL2O75678 378 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 AKAP3O75969 853 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 CST3P01034 146 aaPredicted RBP10.6□□□□□ -0.71
CLN3-261ENST00000637686 CYP11A1P05108 521 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 TPM3P06753 285 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 PSMC2P35998 433 aaKnown RBP10.6□□□□□ -0.71
CLN3-261ENST00000637686 STX17P56962 302 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 DLG4P78352 724 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 ROR1Q01973 937 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 ITIH3Q06033 890 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 SV2CQ496J9 727 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 WSCD1Q658N2 575 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 OVOS1Q6IE37 1185 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 ZNF280DQ6N043 979 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 ELMSAN1Q6PJG2 1045 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 FRMD5Q7Z6J6 570 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 LRRC52Q8N7C0 313 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 HDAC7Q8WUI4 952 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 ANP32BQ92688 251 aaKnown RBP10.6□□□□□ -0.71
CLN3-261ENST00000637686 SRRTQ9BXP5 876 aaKnown RBP10.6□□□□□ -0.71
CLN3-261ENST00000637686 PLEKHA4Q9H4M7 779 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 LIMA1Q9UHB6 759 aaKnown RBP10.6□□□□□ -0.71
CLN3-261ENST00000637686 DPP7Q9UHL4 492 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 FBXW11Q9UKB1 542 aa10.6□□□□□ -0.71
CLN3-261ENST00000637686 MTCL1Q9Y4B5 1905 aaKnown RBP10.59□□□□□ -0.71
CLN3-261ENST00000637686 ARHGEF37A1IGU5 675 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 WDR27A2RRH5 827 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 PHACTR2O75167 634 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 ZMYND10O75800 440 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 ABLIM3O94929 683 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 C4BPAP04003 597 aaKnown RBP10.59□□□□□ -0.71
CLN3-261ENST00000637686 OR4Q2P0C623 313 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 VAMP7P51809 220 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 CLDN10P78369 228 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 MYO1EQ12965 1108 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 TRPC3Q13507 836 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 CBX2Q14781 532 aaPredicted RBP10.59□□□□□ -0.71
CLN3-261ENST00000637686 TCP11X2Q5H9J9 407 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 ATAT1Q5SQI0 421 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 LIN9Q5TKA1 542 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 GPR149Q86SP6 731 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 METTL23Q86XA0 190 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 IRF2BP1Q8IU81 584 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 FAM186BQ8IYM0 893 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 CMASQ8NFW8 434 aaPredicted RBP10.59□□□□□ -0.71
CLN3-261ENST00000637686 ZNF461Q8TAF7 563 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 TMC2Q8TDI7 906 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 MRFAP1L1Q96HT8 127 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 HPDLQ96IR7 371 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 TMEM209Q96SK2 561 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 MAGEC2Q9UBF1 373 aaPredicted RBP10.59□□□□□ -0.71
CLN3-261ENST00000637686 DSEQ9UL01 958 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 SNX9Q9Y5X1 595 aa10.59□□□□□ -0.71
CLN3-261ENST00000637686 C5orf42Q9H799 3197 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 A0A1B0GTH6 734 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 OR6C75A6NL08 312 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 KCNJ18B7U540 433 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 DLL1O00548 723 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 HUS1O60921 280 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 C8AP07357 584 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 TPM2P07951 284 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 EPB41P11171 864 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 KRT13P13646 458 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 CPB1P15086 417 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 ATF2P15336 505 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 CDK11BP21127 795 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 CDC25BP30305 580 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 ELF1P32519 619 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 MTHFRP42898 656 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 AP3M2P53677 418 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 MYL6P60660 151 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 FANCCQ00597 558 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 ADCY1Q08828 1119 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 BIRC3Q13489 604 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 KCNJ12Q14500 433 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 FILIP1LQ4L180 1135 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 PPM1LQ5SGD2 360 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 C1orf220Q5T0J3 134 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 TDRD10Q5VZ19 366 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 TPGS2Q68CL5 300 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 RNF19BQ6ZMZ0 732 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 INTS8Q75QN2 995 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 APTXQ7Z2E3 356 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 ADHFE1Q8IWW8 467 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 THEM5Q8N1Q8 247 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 PDCL2Q8N4E4 241 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 OR10T2Q8NGX3 314 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 SLC7A14Q8TBB6 771 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 SMG7Q92540 1137 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 ZNF707Q96C28 371 aaPredicted RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 CNOT6LQ96LI5 555 aaKnown RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 RIPOR3Q96MK2 946 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 NECTIN4Q96NY8 510 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 PGLYRP2Q96PD5 576 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 RTP3Q9BQQ7 232 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 PHF7Q9BWX1 381 aaPredicted RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 OXCT2Q9BYC2 517 aaPredicted RBP10.58□□□□□ -0.72
CLN3-261ENST00000637686 POMKQ9H5K3 350 aa10.58□□□□□ -0.72
CLN3-261ENST00000637686 SAMSN1Q9NSI8 373 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms