RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TSC2P49815 1807 aa20.73■□□□□ 0.91
CLN3-260ENST00000637578 CLIC2O15247 247 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 SRFP11831 508 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 RBP5P82980 135 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 DUSP4Q13115 394 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 KRBA2Q6ZNG9 492 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 HS2ST1Q7LGA3 356 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 XXYLT1Q8NBI6 393 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 ATAD1Q8NBU5 361 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 OR5B17Q8NGF7 314 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 NOC3LQ8WTT2 800 aaKnown RBP20.72■□□□□ 0.91
CLN3-260ENST00000637578 CORO1BQ9BR76 489 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 RPP25Q9BUL9 199 aaKnown RBP20.72■□□□□ 0.91
CLN3-260ENST00000637578 WNT16Q9UBV4 365 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 YIPF1Q9Y548 306 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 AVPR2P30518 371 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 SMARCB1Q12824 385 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 DUOXA2Q1HG44 320 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 MTSS1LQ765P7 747 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 LRRTM3Q86VH5 581 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 WDR49Q8IV35 697 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 THEM5Q8N1Q8 247 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 ELMOD1Q8N336 334 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 ANKRD36BP1Q96IX9 119 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 ZNF512Q96ME7 567 aaPredicted RBP20.72■□□□□ 0.91
CLN3-260ENST00000637578 DNAJC25Q9H1X3 360 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 LMBRD1Q9NUN5 540 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 EXOC1Q9NV70 894 aa20.72■□□□□ 0.91
CLN3-260ENST00000637578 ZNF197O14709 1029 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 TMEM191BP0C7N4 346 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 PLA2G5P39877 138 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 CCR2P41597 374 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 VCPP55072 806 aaKnown RBP20.71■□□□□ 0.91
CLN3-260ENST00000637578 CYP24A1Q07973 514 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 PLD1Q13393 1074 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 PSMD6Q15008 389 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 LMBRD2Q68DH5 695 aaPredicted RBP20.71■□□□□ 0.91
CLN3-260ENST00000637578 IQCEQ6IPM2 695 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 LIMS2Q7Z4I7 341 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 PDCL2Q8N4E4 241 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 LEMD2Q8NC56 503 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 GOLGA5Q8TBA6 731 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 TCEAL4Q96EI5 215 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 LRRC3Q9BY71 257 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 GZF1Q9H116 711 aaPredicted RBP20.71■□□□□ 0.91
CLN3-260ENST00000637578 SLC2A4RGQ9NR83 387 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 L1RE1Q9UN81 338 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 SLC27A5Q9Y2P5 690 aa20.71■□□□□ 0.91
CLN3-260ENST00000637578 NRG2O14511 850 aaPredicted RBP20.7■□□□□ 0.9
CLN3-260ENST00000637578 MOSPD3O75425 235 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 NPR3P17342 541 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 CEBPBP17676 345 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 CYP2J2P51589 502 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 DPYDQ12882 1025 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 SLC39A12Q504Y0 691 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 IER5LQ5T953 404 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 CYP4A22Q5TCH4 519 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 HS6ST3Q8IZP7 471 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 TMEM86AQ8N2M4 240 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 TTC9BQ8N6N2 239 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 RDH13Q8NBN7 331 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 SPATA18Q8TC71 538 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 C2orf15Q8WU43 125 aaKnown RBP20.7■□□□□ 0.9
CLN3-260ENST00000637578 ING5Q8WYH8 240 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 KCTD10Q9H3F6 313 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 DMAC2Q9NW81 257 aa20.7■□□□□ 0.9
CLN3-260ENST00000637578 MUC6Q6W4X9 2439 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 GOLGA6L22H0YM25 854 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 TNNC2P02585 160 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 RPN1P04843 607 aaKnown RBP20.69■□□□□ 0.9
CLN3-260ENST00000637578 PDZD4Q76G19 769 aaPredicted RBP20.69■□□□□ 0.9
CLN3-260ENST00000637578 TOP6BLQ8N6T0 577 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 ST13P5Q8NFI4 369 aaPredicted RBP20.69■□□□□ 0.9
CLN3-260ENST00000637578 MCRS1Q96EZ8 462 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 ASB3Q9Y575 518 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 WDFY4Q6ZS81 3184 aa20.69■□□□□ 0.9
CLN3-260ENST00000637578 TULP1O00294 542 aaPredicted RBP20.68■□□□□ 0.9
CLN3-260ENST00000637578 GABRDO14764 452 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 HUS1O60921 280 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 RHOBTB3O94955 611 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 KRT19P08727 400 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 PRR29P0C7W0 189 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 ALDH1A3P47895 512 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 CLCN5P51795 746 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 NUBP1P53384 320 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 EPHB3P54753 998 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 BFSP1Q12934 665 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 DPH6Q7L8W6 267 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 TRAPPC11Q7Z392 1133 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 TMC8Q8IU68 726 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 SLC9A9Q8IVB4 645 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 CGRRF1Q99675 332 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 PRRX2Q99811 253 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 ACBD6Q9BR61 282 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 ASAH2Q9NR71 780 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 PDXKO00764 312 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 ECI2O75521 394 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 CFHP08603 1231 aa20.68■□□□□ 0.9
CLN3-260ENST00000637578 TUFMP49411 452 aaKnown RBP20.68■□□□□ 0.9
CLN3-260ENST00000637578 MYO1EQ12965 1108 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms