RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CLLU1OSQ5K130 101 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 ACAD10Q6JQN1 1059 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 TFAP2BQ92481 460 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 PCDHGC3Q9UN70 934 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 INPP5FQ9Y2H2 1132 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 SCN5AQ14524 2016 aa19.63■□□□□ 0.73
CLN3-254ENST00000637050 TUSC3Q13454 348 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 UPP1Q16831 310 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 DPH6Q7L8W6 267 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 CYFIP2Q96F07 1278 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 DDX27Q96GQ7 796 aaKnown RBP19.62■□□□□ 0.73
CLN3-254ENST00000637050 MCOLN1Q9GZU1 580 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 CACNG4Q9UBN1 327 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 NCANO14594 1321 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 TDRD15B5MCY1 1934 aaKnown RBP19.62■□□□□ 0.73
CLN3-254ENST00000637050 CASTOR2A6NHX0 329 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 MOCS3O95396 460 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 FAM163BP0C2L3 166 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 CASQ1P31415 396 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 NOMO3P69849 1222 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 CENPCQ03188 943 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 NOMO2Q5JPE7 1267 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 UNC93AQ86WB7 457 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 TOP6BLQ8N6T0 577 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 APPL2Q8NEU8 664 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 KBTBD7Q8WVZ9 684 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 CTNNBL1Q8WYA6 563 aaPredicted RBP19.62■□□□□ 0.73
CLN3-254ENST00000637050 UROC1Q96N76 676 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 NOX5Q96PH1 765 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 NT5C1AQ9BXI3 368 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 THAP2Q9H0W7 228 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 PDCL3Q9H2J4 239 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 KIAA1257Q9ULG3 409 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 L1RE1Q9UN81 338 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 CAPN6Q9Y6Q1 641 aa19.62■□□□□ 0.73
CLN3-254ENST00000637050 MED7O43513 233 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 HUS1O60921 280 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 FGFR1P11362 822 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 CD19P15391 556 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 ABCB4P21439 1286 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 IGFBP6P24592 240 aaPredicted RBP19.61■□□□□ 0.73
CLN3-254ENST00000637050 RFC2P35250 354 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 ORC1Q13415 861 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 CRIPAKQ8N1N5 446 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 C3orf58Q8NDZ4 430 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 TRIM58Q8NG06 486 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 PAAF1Q9BRP4 392 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 NME7Q9Y5B8 376 aa19.61■□□□□ 0.73
CLN3-254ENST00000637050 TET1Q8NFU7 2136 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 LOC101059915A0A1B0GWI6 518 aaPredicted RBP19.6■□□□□ 0.73
CLN3-254ENST00000637050 BUB1O43683 1085 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 LSM8O95777 96 aaKnown RBP19.6■□□□□ 0.73
CLN3-254ENST00000637050 VDRP11473 427 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 AARSP49588 968 aaKnown RBP eCLIP19.6■□□□□ 0.73
CLN3-254ENST00000637050 TCEAL1Q15170 157 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 NAA35Q5VZE5 725 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 PPP1R2P3Q6NXS1 205 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 DEFB128Q7Z7B8 93 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 URGCPQ8TCY9 931 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 CPA5Q8WXQ8 436 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 RFFLQ8WZ73 363 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 VWCEQ96DN2 955 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 KANSL3Q9P2N6 904 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 PCDHB7Q9Y5E2 793 aa19.6■□□□□ 0.73
CLN3-254ENST00000637050 CYB561D2O14569 222 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 PAX3P23760 479 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 SSTR3P32745 418 aaPredicted RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 CDH5P33151 784 aaPredicted RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 GPC5P78333 572 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 DSC1Q08554 894 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 UBE2Q1Q7Z7E8 422 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 PASD1Q8IV76 773 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 PDCL2Q8N4E4 241 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 ARHGEF26Q96DR7 871 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 HEXIM2Q96MH2 286 aaKnown RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 ZNF518BQ9C0D4 1074 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 LHX5Q9H2C1 402 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 PCDHGC5Q9Y5F6 944 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 FAM170AA1A519 330 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 KIAA0355O15063 1070 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 WARSP23381 471 aaKnown RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 NSFP46459 744 aaKnown RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 CNGA2Q16280 664 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 IFI16Q16666 785 aaKnown RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 SGO2Q562F6 1265 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 CNKSR3Q6P9H4 555 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 CD300LGQ6UXG3 332 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 PHF13Q86YI8 300 aaPredicted RBP19.59■□□□□ 0.73
CLN3-254ENST00000637050 ADGRF2Q8IZF7 708 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 MCOLN2Q8IZK6 566 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 OR6B3Q8NGW1 331 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 SENP8Q96LD8 212 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 ALS2CR12Q96Q35 445 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 TBC1D13Q9NVG8 400 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 GTF3C4Q9UKN8 822 aa19.59■□□□□ 0.73
CLN3-254ENST00000637050 CTAGE9A4FU28 777 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 TRIM43BA6NCK2 446 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 O00370 1275 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 TIMP1P01033 207 aa19.58■□□□□ 0.72
CLN3-254ENST00000637050 CYP1A2P05177 515 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms