RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 INCA1Q0VD86 236 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 LLGL2Q6P1M3 1020 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 DPH6Q7L8W6 267 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 C12orf29Q8N999 325 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 KBTBD7Q8WVZ9 684 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 TRIM43Q96BQ3 446 aaPredicted RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 TMEM176AQ96HP8 235 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 FAXDC2Q96IV6 333 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 LUC7LQ9NQ29 371 aaKnown RBP21.43■■□□□ 1.02
CLN3-250ENST00000636839 L1RE1Q9UN81 338 aa21.43■■□□□ 1.02
CLN3-250ENST00000636839 I3L4J1 428 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 ENC1O14682 589 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 RTN2O75298 545 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 EOMESO95936 686 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 CXCL10P02778 98 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 UPP1Q16831 310 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 KIF18AQ8NI77 898 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 HASPINQ8TF76 798 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 HEXIM2Q96MH2 286 aaKnown RBP21.42■■□□□ 1.02
CLN3-250ENST00000636839 ZNF560Q96MR9 790 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 DPEP3Q9H4B8 488 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 OSGEPQ9NPF4 335 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 PRDM5Q9NQX1 630 aaPredicted RBP21.42■■□□□ 1.02
CLN3-250ENST00000636839 GDAP2Q9NXN4 497 aa21.42■■□□□ 1.02
CLN3-250ENST00000636839 KIF2AO00139 706 aaPredicted RBP21.41■■□□□ 1.02
CLN3-250ENST00000636839 DDHD2O94830 711 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 CYP1A1P04798 512 aaPredicted RBP21.41■■□□□ 1.02
CLN3-250ENST00000636839 PDGFRBP09619 1106 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 GZMAP12544 262 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 CASQ1P31415 396 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 ACAD10Q6JQN1 1059 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 NECAB2Q7Z6G3 386 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 ACOT1Q86TX2 421 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 ZNF677Q86XU0 584 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 OR6B3Q8NGW1 331 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 GOLPH3Q9H4A6 298 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 UBN1Q9NPG3 1134 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 TIMM13Q9Y5L4 95 aaPredicted RBP21.41■■□□□ 1.02
CLN3-250ENST00000636839 ITGB1P05556 798 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 PNPLA4P41247 253 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 SV2CQ496J9 727 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 DENND1BQ6P3S1 775 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 GLB1LQ6UWU2 654 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 CD300LGQ6UXG3 332 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 WDTC1Q8N5D0 677 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 HCSTQ9UBK5 93 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 COG5Q9UP83 839 aa21.41■■□□□ 1.02
CLN3-250ENST00000636839 ANKRD62A6NC57 917 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 CYB561D2O14569 222 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 TMEM253P0C7T8 217 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 GRIK3Q13003 919 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 PTPROQ16827 1216 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 WSCD1Q658N2 575 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLN3-250ENST00000636839 OSTM1Q86WC4 334 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 PDCL2Q8N4E4 241 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 TMEM161AQ9NX61 479 aa21.4■■□□□ 1.02
CLN3-250ENST00000636839 PAEPP09466 180 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 NOP2P46087 812 aaKnown RBP21.39■■□□□ 1.02
CLN3-250ENST00000636839 NOMO3P69849 1222 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 CCDC142Q17RM4 750 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 NOMO2Q5JPE7 1267 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.39■■□□□ 1.02
CLN3-250ENST00000636839 LIMS2Q7Z4I7 341 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 APPL2Q8NEU8 664 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 SLC35G2Q8TBE7 412 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 MYO1AQ9UBC5 1043 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 INTUQ9ULD6 942 aa21.39■■□□□ 1.02
CLN3-250ENST00000636839 B3GAT3O94766 335 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 BRCC3P46736 316 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 TUSC3Q13454 348 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 TIGD5Q53EQ6 642 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 CRIPAKQ8N1N5 446 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 C1orf131Q8NDD1 294 aaKnown RBP21.39■■□□□ 1.01
CLN3-250ENST00000636839 CTNNBL1Q8WYA6 563 aaPredicted RBP21.39■■□□□ 1.01
CLN3-250ENST00000636839 SENP8Q96LD8 212 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 NOX5Q96PH1 765 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 NT5C1AQ9BXI3 368 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 TBC1D13Q9NVG8 400 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 DNAJB4Q9UDY4 337 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 PCDHB7Q9Y5E2 793 aa21.39■■□□□ 1.01
CLN3-250ENST00000636839 INPPL1O15357 1258 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 PALMO75781 387 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 GNL1P36915 607 aaPredicted RBP21.38■■□□□ 1.01
CLN3-250ENST00000636839 APBB2Q92870 758 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 FAM49BQ9NUQ9 324 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 CYTH4Q9UIA0 394 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 TANC1Q9C0D5 1861 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 GRID2IPA4D2P6 1211 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 A8MXQ7 604 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 HUS1O60921 280 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 ATP1A1P05023 1023 aaKnown RBP21.38■■□□□ 1.01
CLN3-250ENST00000636839 CSF2RAP15509 400 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 ACAT1P24752 427 aaKnown RBP21.38■■□□□ 1.01
CLN3-250ENST00000636839 RPL9P32969 192 aaKnown RBP21.38■■□□□ 1.01
CLN3-250ENST00000636839 ADGRF2Q8IZF7 708 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 MCOLN2Q8IZK6 566 aa21.38■■□□□ 1.01
CLN3-250ENST00000636839 TDRD15B5MCY1 1934 aaKnown RBP21.37■■□□□ 1.01
CLN3-250ENST00000636839 MYH10P35580 1976 aa21.37■■□□□ 1.01
CLN3-250ENST00000636839 BTNL10A8MVZ5 291 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms