RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PPEF2O14830 753 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 MAPK13O15264 365 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 XYLBO75191 536 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 CLSTN1O94985 981 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 C8AP07357 584 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 HNRNPA1P09651 372 aaKnown RBP eCLIP19.51■□□□□ 0.71
CLN3-243ENST00000635973 FSHRP23945 695 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 IGFBP6P24592 240 aaPredicted RBP19.51■□□□□ 0.71
CLN3-243ENST00000635973 POLR2BP30876 1174 aaKnown RBP19.51■□□□□ 0.71
CLN3-243ENST00000635973 OR1D2P34982 312 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 STX17P56962 302 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 TCF15Q12870 199 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 DSTYKQ6XUX3 929 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 ANKS3Q6ZW76 656 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 INTS8Q75QN2 995 aaKnown RBP19.51■□□□□ 0.71
CLN3-243ENST00000635973 CSGALNACT2Q8N6G5 542 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 OR5B17Q8NGF7 314 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 MYADMQ96S97 322 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 N4BP1O75113 896 aaKnown RBP19.5■□□□□ 0.71
CLN3-243ENST00000635973 FGFR3P22607 806 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 CLCN5P51795 746 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 NLRP12P59046 1061 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 CAVIN1Q6NZI2 390 aaKnown RBP19.5■□□□□ 0.71
CLN3-243ENST00000635973 GRASPQ7Z6J2 395 aaPredicted RBP19.5■□□□□ 0.71
CLN3-243ENST00000635973 C1orf127Q8N9H9 656 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 MKNK1Q9BUB5 465 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 AGAP1Q9UPQ3 857 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 CDY1Q9Y6F8 540 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 ZFP37Q9Y6Q3 630 aaPredicted RBP19.5■□□□□ 0.71
CLN3-243ENST00000635973 DOCK8Q8NF50 2099 aa19.5■□□□□ 0.71
CLN3-243ENST00000635973 ANO9A1A5B4 782 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 LRRIQ3A6PVS8 624 aaPredicted RBP19.49■□□□□ 0.71
CLN3-243ENST00000635973 PIRO00625 290 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 SLC16A3O15427 465 aaKnown RBP19.49■□□□□ 0.71
CLN3-243ENST00000635973 CCL16O15467 120 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 GALR2O43603 387 aaPredicted RBP19.49■□□□□ 0.71
CLN3-243ENST00000635973 PHACTR2O75167 634 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 LAMP2P13473 410 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 TKTP29401 623 aaKnown RBP19.49■□□□□ 0.71
CLN3-243ENST00000635973 PNPLA4P41247 253 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 TAF6P49848 677 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 VAMP7P51809 220 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 RBP5P82980 135 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 BFSP1Q12934 665 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 BIRC3Q13489 604 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 RAB33AQ14088 237 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 DPCR1Q3MIW9 517 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 SV2CQ496J9 727 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 TTI2Q6NXR4 508 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 SASS6Q6UVJ0 657 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 CD300LGQ6UXG3 332 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 SIX5Q8N196 739 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 TMEM105Q8N8V8 129 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 SLC7A14Q8TBB6 771 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 PARD3BQ8TEW8 1205 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 RSAD2Q8WXG1 361 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 SUSD3Q96L08 255 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 MTRRQ9UBK8 725 aa19.49■□□□□ 0.71
CLN3-243ENST00000635973 ARHGEF37A1IGU5 675 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 H0Y858 1186 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 SYN3O14994 580 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 PAPLNO95428 1278 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 CFHP08603 1231 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 ODC1P11926 461 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 PAX3P23760 479 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 HOXA9P31269 272 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 ELF1P32519 619 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 AP3M2P53677 418 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 LILRA4P59901 499 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 MYO1EQ12965 1108 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 TRPC3Q13507 836 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 UVSSAQ2YD98 709 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 CCDC40Q4G0X9 1142 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 RBM43Q6ZSC3 357 aaKnown RBP19.48■□□□□ 0.71
CLN3-243ENST00000635973 TRAPPC11Q7Z392 1133 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 SLC44A3Q8N4M1 653 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 APPL2Q8NEU8 664 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 TMC2Q8TDI7 906 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 CEP63Q96MT8 703 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 RWDD2AQ9UIY3 292 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 PCDHB8Q9UN66 801 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 BACE2Q9Y5Z0 518 aa19.48■□□□□ 0.71
CLN3-243ENST00000635973 DOCK6Q96HP0 2047 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 ADAM12O43184 909 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 NARSO43776 548 aaKnown RBP19.47■□□□□ 0.71
CLN3-243ENST00000635973 FGFR1OPO95684 399 aaKnown RBP19.47■□□□□ 0.71
CLN3-243ENST00000635973 TRIM49P0CI25 452 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 TRIM49CP0CI26 452 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 DLG4P78352 724 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 TPD52L1Q16890 204 aaPredicted RBP19.47■□□□□ 0.71
CLN3-243ENST00000635973 KLHL40Q2TBA0 621 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 DCAF17Q5H9S7 520 aaPredicted RBP19.47■□□□□ 0.71
CLN3-243ENST00000635973 FOXR2Q6PJQ5 311 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 ZC3H3Q8IXZ2 948 aaKnown RBP19.47■□□□□ 0.71
CLN3-243ENST00000635973 LRRC52Q8N7C0 313 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 PLEKHO2Q8TD55 490 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 SENP8Q96LD8 212 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 DUSP9Q99956 384 aaKnown RBP19.47■□□□□ 0.71
CLN3-243ENST00000635973 MMRN2Q9H8L6 949 aa19.47■□□□□ 0.71
CLN3-243ENST00000635973 FAM86C1Q9NVL1 165 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms