RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 ADAMTS1Q9UHI8 967 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 COL4A4P53420 1690 aaPredicted RBP12.52□□□□□ -0.41
PDPN-211ENST00000617617 KIAA0100Q14667 2235 aaKnown RBP12.52□□□□□ -0.41
PDPN-211ENST00000617617 MYH10P35580 1976 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 EFEMP2O95967 443 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 ITGB8P26012 769 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 CLCNKBP51801 687 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 GSCP56915 257 aaPredicted RBP12.52□□□□□ -0.41
PDPN-211ENST00000617617 ARHGAP17Q68EM7 881 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 ZNF689Q96CS4 500 aaPredicted RBP12.52□□□□□ -0.41
PDPN-211ENST00000617617 SUSD3Q96L08 255 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 ELOVL4Q9GZR5 314 aa12.52□□□□□ -0.41
PDPN-211ENST00000617617 WEE2P0C1S8 567 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 TMEM253P0C7T8 217 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 MAGEA1P43355 309 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 PPIGQ13427 754 aaKnown RBP eCLIP12.51□□□□□ -0.41
PDPN-211ENST00000617617 PHF13Q86YI8 300 aaPredicted RBP12.51□□□□□ -0.41
PDPN-211ENST00000617617 APPL2Q8NEU8 664 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 ZNF606Q8WXB4 792 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 PCDHB18PQ96TA0 734 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 NT5C1AQ9BXI3 368 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 KRT86O43790 486 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 DGKIO75912 1065 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 MTA2O94776 668 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 MMEP08473 750 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 CNGA2Q16280 664 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 ACAD10Q6JQN1 1059 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 GLYCTKQ8IVS8 523 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 TMEM130Q8N3G9 435 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 TOP1MTQ969P6 601 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 TRIM11Q96F44 468 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 GOLGA2P5Q9HBQ8 144 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 LRFN2Q9ULH4 789 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 SNX9Q9Y5X1 595 aa12.51□□□□□ -0.41
PDPN-211ENST00000617617 ANKRD62A6NC57 917 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 HUS1O60921 280 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 AMHP03971 560 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 MYBL1P10243 752 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 RAG1P15918 1043 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 LHX1P48742 406 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 LRRC43Q8N309 656 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 PDCL2Q8N4E4 241 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 ELMO3Q96BJ8 720 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 MRPL45Q9BRJ2 306 aaKnown RBP12.5□□□□□ -0.41
PDPN-211ENST00000617617 PCDHB8Q9UN66 801 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 L1RE1Q9UN81 338 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 STXBP5LQ9Y2K9 1186 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 BRCA2P51587 3418 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 DDHD2O94830 711 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 FGFR1P11362 822 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 USP8P40818 1118 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 RAP1GAPP47736 663 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 NDST1P52848 882 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 KIF5AQ12840 1032 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 CCDC122Q5T0U0 273 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 LCLAT1Q6UWP7 414 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 CMTR2Q8IYT2 770 aaKnown RBP12.5□□□□□ -0.41
PDPN-211ENST00000617617 C3orf58Q8NDZ4 430 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 ZSWIM1Q9BR11 485 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.5□□□□□ -0.41
PDPN-211ENST00000617617 AVENQ9NQS1 362 aaPredicted RBP12.5□□□□□ -0.41
PDPN-211ENST00000617617 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.5□□□□□ -0.41
PDPN-211ENST00000617617 NME7Q9Y5B8 376 aa12.5□□□□□ -0.41
PDPN-211ENST00000617617 RCCD1A6NED2 376 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 CYB561D2O14569 222 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 POMCP01189 267 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 H2AFZP0C0S5 128 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 ODC1P11926 461 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 RPL34P49207 117 aaKnown RBP12.49□□□□□ -0.41
PDPN-211ENST00000617617 CDH8P55286 799 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 NOMO3P69849 1222 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 SCARA5Q6ZMJ2 495 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 H2AFVQ71UI9 128 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 KIAA1328Q86T90 577 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 ADGRF2Q8IZF7 708 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 SENP8Q96LD8 212 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 TWNKQ96RR1 684 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 OXCT2Q9BYC2 517 aaPredicted RBP12.49□□□□□ -0.41
PDPN-211ENST00000617617 CYLDQ9NQC7 956 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.49□□□□□ -0.41
PDPN-211ENST00000617617 SETSIPP0DME0 302 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 CYP27A1Q02318 531 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 PKDCCQ504Y2 493 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 HTATIP2Q9BUP3 242 aa12.49□□□□□ -0.41
PDPN-211ENST00000617617 O00370 1275 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 SYN3O14994 580 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 CYP1A2P05177 515 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 CSF2RAP15509 400 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 CD58P19256 250 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 GNL1P36915 607 aaPredicted RBP12.48□□□□□ -0.41
PDPN-211ENST00000617617 WDR5P61964 334 aaKnown RBP12.48□□□□□ -0.41
PDPN-211ENST00000617617 C1QBPQ07021 282 aaKnown RBP12.48□□□□□ -0.41
PDPN-211ENST00000617617 DEFB128Q7Z7B8 93 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 ZNF280BQ86YH2 543 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 ABI1Q8IZP0 508 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 C17orf53Q8N3J3 647 aaPredicted RBP12.48□□□□□ -0.41
PDPN-211ENST00000617617 RNF169Q8NCN4 708 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 STK32AQ8WU08 396 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 TFAP2BQ92481 460 aa12.48□□□□□ -0.41
PDPN-211ENST00000617617 TNIP3Q96KP6 325 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms