RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 MEGF6O75095 1541 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 ITGA4P13612 1032 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 HADHAP40939 763 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 TBX2Q13207 712 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 MED21Q13503 144 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 CYTH1Q15438 398 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 DCAF6Q58WW2 860 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 MEI1Q5TIA1 1274 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 IER5Q5VY09 327 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 PPIL6Q8IXY8 311 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 POP1Q99575 1024 aaKnown RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 AURKCQ9UQB9 309 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 TRAF3IP3Q9Y228 551 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 COL3A1P02461 1466 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 MAGEB2O15479 319 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 KCNA2P16389 499 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 NPTX2P47972 431 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 UGP2Q16851 508 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 KCNT1Q5JUK3 1230 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 SNX19Q92543 992 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 MED15Q96RN5 788 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 TLR10Q9BXR5 811 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 PRMT7Q9NVM4 692 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 GPD1P21695 349 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 CTCFP49711 727 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 KCNA1Q09470 495 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 MAPRE2Q15555 327 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 TRIP10Q15642 601 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 EFCAB12Q6NXP0 572 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 XRRA1Q6P2D8 792 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 CYB5D1Q6P9G0 228 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 SLC20A1Q8WUM9 679 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 E2F7Q96AV8 911 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 TASP1Q9H6P5 420 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 LMCD1Q9NZU5 365 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 ARHGAP10A1A4S6 786 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 SMAPO00193 183 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 CPB1P15086 417 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 ATXN3P54252 364 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 TMA16Q96EY4 203 aaKnown RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 HPDLQ96IR7 371 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 NUDT12Q9BQG2 462 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 MANSC1Q9H8J5 431 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 RAB21Q9UL25 225 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 MTO1Q9Y2Z2 717 aaKnown RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 SNX5Q9Y5X3 404 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 AIM2O14862 343 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 ICAM1P05362 532 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 SPRP35270 261 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 IFNEQ86WN2 208 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 OR6J1Q8NGC5 347 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 CYP2W1Q8TAV3 490 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 PTPRN2Q92932 1015 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 PABPC5Q96DU9 382 aaKnown RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 ASIC4Q96FT7 647 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 CDC42EP4Q9H3Q1 356 aaKnown RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 TMBIM4Q9HC24 238 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 F8W8V4 182 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 GEMIN4P57678 1058 aaKnown RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 NLRP11P59045 1033 aaKnown RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 BOLA3Q53S33 107 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 ZNF669Q96BR6 464 aaPredicted RBP14.65□□□□□ -0.06
CPSF1-212ENST00000616140 FAM111AQ96PZ2 611 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 GRID1Q9ULK0 1009 aa14.65□□□□□ -0.06
CPSF1-212ENST00000616140 DNAJC6O75061 913 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 TAS2R42Q7RTR8 314 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SAMD7Q7Z3H4 446 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 RDM1Q8NG50 284 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 DNAJC9Q8WXX5 260 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 OLFM3Q96PB7 478 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 GCNAQ96QF7 691 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 KCNK16Q96T55 309 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SEMA4AQ9H3S1 761 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 BATF3Q9NR55 127 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 NDFIP2Q9NV92 336 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 GGA3Q9NZ52 723 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 DDTLA6NHG4 134 aaPredicted RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SASH3O75995 380 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 NFKBIAP25963 317 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 STIP1P31948 543 aaKnown RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 LBRQ14739 615 aaKnown RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SV2AQ7L0J3 742 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 TRIM62Q9BVG3 475 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 NOD2Q9HC29 1040 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.64□□□□□ -0.072e-9■■■■■ 33.2
CPSF1-212ENST00000616140 CLTCQ00610 1675 aaKnown RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 IL18RAPO95256 599 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 ITGB3P05106 788 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 POLBP06746 335 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 CTSHP09668 335 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 TARSP26639 723 aaKnown RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 RNF219Q5W0B1 726 aaPredicted RBP14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SZRD1Q7Z422 152 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SCFD2Q8WU76 684 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 GPRASP2Q96D09 838 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 PNMA5Q96PV4 448 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 FAM129AQ9BZQ8 928 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 SLC13A4Q9UKG4 626 aa14.64□□□□□ -0.07
CPSF1-212ENST00000616140 ADCY3O60266 1144 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms