RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ELMO3Q96BJ8 720 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 MMS19Q96T76 1030 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 PLEKHA4Q9H4M7 779 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 NXF1Q9UBU9 619 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 DPP7Q9UHL4 492 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 FBXW11Q9UKB1 542 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 MTCL1Q9Y4B5 1905 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 GABRDO14764 452 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 NFKBIBQ15653 356 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 CLUL1Q15846 466 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 ZNF667Q5HYK9 610 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 THEM5Q8N1Q8 247 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 SMRP1Q8NCR6 262 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 KREMEN2Q8NCW0 462 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 FBXL13Q8NEE6 735 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 ENOX1Q8TC92 643 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 KBTBD7Q8WVZ9 684 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 ATXN2LQ8WWM7 1075 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 CNOT6LQ96LI5 555 aaKnown RBP17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 TMEM209Q96SK2 561 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 PI4K2AQ9BTU6 479 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 THAP9Q9H5L6 903 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 CD207Q9UJ71 328 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 POLIQ9UNA4 740 aa17.74■□□□□ 0.43
CCDC28A-202ENST00000611852 LRRN2O75325 713 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 TACC1O75410 805 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 CLSTN1O94985 981 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 LETM1O95202 739 aaPredicted RBP17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 OR4Q2P0C623 313 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 CPB1P15086 417 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 ATF2P15336 505 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 LHX1P48742 406 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 FMO5P49326 533 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 AAK1Q2M2I8 961 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 TPGS2Q68CL5 300 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 SPOPLQ6IQ16 392 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 ELMSAN1Q6PJG2 1045 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 OSTM1Q86WC4 334 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 SEMA4DQ92854 862 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 IMPG2Q9BZV3 1241 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 ZCWPW1Q9H0M4 648 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 DNAJC25Q9H1X3 360 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 S1PR5Q9H228 398 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 SFXN1Q9H9B4 322 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 RAB20Q9NX57 234 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 DDX43Q9NXZ2 648 aaKnown RBP17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 COQ4Q9Y3A0 265 aa17.73■□□□□ 0.43
CCDC28A-202ENST00000611852 FAM163BP0C2L3 166 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 NOP14P78316 857 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 MRPS5P82675 430 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 GPR17Q13304 367 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 RNF19BQ6ZMZ0 732 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 C12orf76Q8N812 135 aaPredicted RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 ACBD6Q9BR61 282 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 MRPL45Q9BRJ2 306 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 APOL5Q9BWW9 433 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 NFE2L3Q9Y4A8 694 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 UNC80Q8N2C7 3258 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 SYCE3A1L190 88 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 SPDYE4A6NLX3 237 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 PMM2O15305 246 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 HCRTO43612 131 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 RFPL2O75678 378 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 WARSP23381 471 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 KCNQ1P51787 676 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 MYL7Q01449 175 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 KCNH2Q12809 1159 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 LRRTM3Q86VH5 581 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 CREBRFQ8IUR6 639 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 FAM114A1Q8IWE2 563 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 ASB2Q96Q27 587 aa17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 APOBEC3GQ9HC16 384 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 SAMSN1Q9NSI8 373 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 AFF4Q9UHB7 1163 aaKnown RBP17.72■□□□□ 0.43
CCDC28A-202ENST00000611852 GRXCR2A6NFK2 248 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 MBTPS2O43462 519 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 N4BP1O75113 896 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 ZMYND10O75800 440 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 VNN2O95498 520 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 C8AP07357 584 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 P4HA1P13674 534 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 ACAT1P24752 427 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 LMO2P25791 158 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 ASPAP45381 313 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 ITIH3Q06033 890 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 ADCY1Q08828 1119 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 SMAD4Q13485 552 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 UVSSAQ2YD98 709 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 SLC39A12Q504Y0 691 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 HSP90AA4PQ58FG1 418 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 RARS2Q5T160 578 aaKnown RBP17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 LIN9Q5TKA1 542 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 PTCRAQ6ISU1 281 aaPredicted RBP17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 TMC5Q6UXY8 1006 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 SCARA5Q6ZMJ2 495 aa17.71■□□□□ 0.43
CCDC28A-202ENST00000611852 TCEAL8Q8IYN2 117 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms