RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 LRRC63Q05C16 580 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 ENPEPQ07075 957 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 RNF135Q8IUD6 432 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 CCDC150Q8NCX0 1101 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 DHTKD1Q96HY7 919 aaPredicted RBP20.79■□□□□ 0.92
UPF1-212ENST00000601689 MKNK1Q9BUB5 465 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 HSFX1Q9UBD0 423 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 SIX4Q9UIU6 781 aa20.79■□□□□ 0.92
UPF1-212ENST00000601689 ZFP37Q9Y6Q3 630 aaPredicted RBP20.79■□□□□ 0.92
UPF1-212ENST00000601689 BICDL2A1A5D9 508 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 DCXO43602 365 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 STX10O60499 249 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 PTPN2P17706 415 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 TRIM21P19474 475 aaKnown RBP20.78■□□□□ 0.92
UPF1-212ENST00000601689 FSHRP23945 695 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 NFE2Q16621 373 aaPredicted RBP20.78■□□□□ 0.92
UPF1-212ENST00000601689 RNF19BQ6ZMZ0 732 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 GRASPQ7Z6J2 395 aaPredicted RBP20.78■□□□□ 0.92
UPF1-212ENST00000601689 ADGRF2Q8IZF7 708 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 ZDHHC14Q8IZN3 488 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 TRIML1Q8N9V2 468 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 ERCC4Q92889 916 aaPredicted RBP20.78■□□□□ 0.92
UPF1-212ENST00000601689 ZNF707Q96C28 371 aaPredicted RBP20.78■□□□□ 0.92
UPF1-212ENST00000601689 BORCS6Q96GS4 357 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 PGLYRP2Q96PD5 576 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 ACBD6Q9BR61 282 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 C1QTNF1Q9BXJ1 281 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 IMPG2Q9BZV3 1241 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 DDX43Q9NXZ2 648 aaKnown RBP20.78■□□□□ 0.92
UPF1-212ENST00000601689 CDH22Q9UJ99 828 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 MAN1B1Q9UKM7 699 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 INSL5Q9Y5Q6 135 aa20.78■□□□□ 0.92
UPF1-212ENST00000601689 ZNF197O14709 1029 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 FAM163BP0C2L3 166 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 CASP4P49662 377 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 EPHB3P54753 998 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 WDR72Q3MJ13 1102 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 PABPC1LQ4VXU2 614 aaKnown RBP20.77■□□□□ 0.92
UPF1-212ENST00000601689 SLC39A12Q504Y0 691 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 CYP4A22Q5TCH4 519 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 ISM2Q6H9L7 571 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 CENPPQ6IPU0 288 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 CLEC17AQ6ZS10 378 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 PDCL2Q8N4E4 241 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 LEMD2Q8NC56 503 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 SPPL2BQ8TCT7 592 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 ZCWPW1Q9H0M4 648 aa20.77■□□□□ 0.92
UPF1-212ENST00000601689 TTC28Q96AY4 2481 aa20.77■□□□□ 0.91
UPF1-212ENST00000601689 PTPRJQ12913 1337 aa20.77■□□□□ 0.91
UPF1-212ENST00000601689 DENND4AQ7Z401 1863 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 LRRIQ3A6PVS8 624 aaPredicted RBP20.76■□□□□ 0.91
UPF1-212ENST00000601689 C2CD4DB7Z1M9 353 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 STAU1O95793 577 aaKnown RBP20.76■□□□□ 0.91
UPF1-212ENST00000601689 CST3P01034 146 aaPredicted RBP20.76■□□□□ 0.91
UPF1-212ENST00000601689 OR4Q2P0C623 313 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 CCNE1P24864 410 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 CLDN10P78369 228 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 DUSP4Q13115 394 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 VEPH1Q14D04 833 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 MAPRE1Q15691 268 aaKnown RBP20.76■□□□□ 0.91
UPF1-212ENST00000601689 TAF12Q16514 161 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 SGSM1Q2NKQ1 1148 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 ZNF699Q32M78 642 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 GET4Q7L5D6 327 aaPredicted RBP20.76■□□□□ 0.91
UPF1-212ENST00000601689 ITIH5Q86UX2 942 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 ADSSL1Q8N142 457 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 DNAI2Q9GZS0 605 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 SNX25Q9H3E2 840 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 CD320Q9NPF0 282 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 L1RE1Q9UN81 338 aa20.76■□□□□ 0.91
UPF1-212ENST00000601689 MTMR11A4FU01 709 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 PI4K2BG5E9Z4 385 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 AKAP3O75969 853 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 TWF1Q12792 350 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 NCOA4Q13772 614 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 MGAT5BQ3V5L5 792 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 ZNF667Q5HYK9 610 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 PDZD4Q76G19 769 aaPredicted RBP20.75■□□□□ 0.91
UPF1-212ENST00000601689 CXorf38Q8TB03 319 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 FAM200AQ8TCP9 573 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 TAF4BQ92750 862 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 NXPE3Q969Y0 559 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 KIAA1468Q9P260 1216 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 MRPS23Q9Y3D9 190 aaKnown RBP20.75■□□□□ 0.91
UPF1-212ENST00000601689 ASB3Q9Y575 518 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 PCDHB5Q9Y5E4 795 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 TSC2P49815 1807 aa20.75■□□□□ 0.91
UPF1-212ENST00000601689 MYO10Q9HD67 2058 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 SEC24AO95486 1093 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 FGFR1OPO95684 399 aaKnown RBP20.74■□□□□ 0.91
UPF1-212ENST00000601689 C4BPAP04003 597 aaKnown RBP20.74■□□□□ 0.91
UPF1-212ENST00000601689 GTF2H1P32780 548 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 CAMK4Q16566 473 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 ZCWPW2Q504Y3 356 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 KLHL10Q6JEL2 608 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 OR10T2Q8NGX3 314 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 ZNF516Q92618 1163 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 CORO1BQ9BR76 489 aa20.74■□□□□ 0.91
UPF1-212ENST00000601689 METTL14Q9HCE5 456 aaKnown RBP20.74■□□□□ 0.91
UPF1-212ENST00000601689 ASAH2Q9NR71 780 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms