RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	HIPK3	Q9H422	1215 aa		12.48	□□□□□ -0.41
VRK3-223	ENST00000601341	RNF216	Q9NWF9	866 aa	Predicted RBP	12.48	□□□□□ -0.41
VRK3-223	ENST00000601341	DPP3	Q9NY33	737 aa		12.48	□□□□□ -0.41
VRK3-223	ENST00000601341	TTC7A	Q9ULT0	858 aa	Predicted RBP	12.48	□□□□□ -0.41
VRK3-223	ENST00000601341	UBQLN1	Q9UMX0	589 aa	Known RBP	12.48	□□□□□ -0.41
VRK3-223	ENST00000601341	FOXN3	O00409	490 aa	Predicted RBP	12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	MGEA5	O60502	916 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	KIF4A	O95239	1232 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	ITGB3	P05106	788 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	CXCR5	P32302	372 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	GGCX	P38435	758 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	RBP5	P82980	135 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	CUL1	Q13616	776 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	TCEAL1	Q15170	157 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	ZNF699	Q32M78	642 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	SPOPL	Q6IQ16	392 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	TPCN2	Q8NHX9	752 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	SLC30A5	Q8TAD4	765 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	SHC3	Q92529	594 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	PGBD4	Q96DM1	585 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	ZMAT2	Q96NC0	199 aa	Known RBP	12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	GPR88	Q9GZN0	384 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	MCOLN1	Q9GZU1	580 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	TSPYL1	Q9H0U9	437 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	APOBEC3G	Q9HC16	384 aa	Known RBP	12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	RGS18	Q9NS28	235 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	KLK14	Q9P0G3	267 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	SIX4	Q9UIU6	781 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	ATP11B	Q9Y2G3	1177 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	GIT1	Q9Y2X7	761 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	NUB1	Q9Y5A7	615 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	NCAN	O14594	1321 aa		12.47	□□□□□ -0.41
VRK3-223	ENST00000601341	NCK2	O43639	380 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	EVI5	O60447	810 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	NBN	O60934	754 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	HADHB	P55084	474 aa	Known RBP	12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	CUL2	Q13617	745 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	EMC10	Q5UCC4	262 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	SLC24A5	Q71RS6	500 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	SND1	Q7KZF4	910 aa	Known RBP eCLIP	12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	FAM71A	Q8IYT1	594 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	RASGEF1C	Q8N431	466 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	FAM76A	Q8TAV0	307 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	CXorf38	Q8TB03	319 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	HDAC7	Q8WUI4	952 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	KAT5	Q92993	513 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	FAXDC2	Q96IV6	333 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	SYT11	Q9BT88	431 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	NIF3L1	Q9GZT8	377 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	XYLT2	Q9H1B5	865 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	UBN1	Q9NPG3	1134 aa		12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	12.46	□□□□□ -0.41
VRK3-223	ENST00000601341	BHMG1	C9JSJ3	638 aa	Predicted RBP	12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	HSF2BP	O75031	334 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	ZMYND10	O75800	440 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	TMEM253	P0C7T8	217 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	CYP3A5	P20815	502 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	POLR2B	P30876	1174 aa	Known RBP	12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	PLEKHG4	Q58EX7	1191 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	ZNF667	Q5HYK9	610 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	GLRA4	Q5JXX5	417 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	SMYD5	Q6GMV2	418 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	AGMO	Q6ZNB7	445 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	SEPT8	Q92599	483 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	APBB2	Q92870	758 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	ELMO3	Q96BJ8	720 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	RPS6KC1	Q96S38	1066 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	PACSIN1	Q9BY11	444 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	CXCL16	Q9H2A7	254 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	VRTN	Q9H8Y1	702 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	AGAP1	Q9UPQ3	857 aa		12.46	□□□□□ -0.42
VRK3-223	ENST00000601341	GOLGA6C	A6NDK9	693 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341		C9IYK1	514 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	PGRMC1	O00264	195 aa	Known RBP	12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	TULP2	O00295	520 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	HEXIM1	O94992	359 aa	Known RBP	12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	STAU1	O95793	577 aa	Known RBP	12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	EOMES	O95936	686 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	FTCD	O95954	541 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	GOLGA6D	P0CG33	693 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	P4HA1	P13674	534 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	USP8	P40818	1118 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	GUCY2F	P51841	1108 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	GYS2	P54840	703 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	MYO1E	Q12965	1108 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	GPNMB	Q14956	572 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	WDR72	Q3MJ13	1102 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	SCARA3	Q6AZY7	606 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	RTN4RL1	Q86UN2	441 aa	Predicted RBP	12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	ECHDC2	Q86YB7	292 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	GPIHBP1	Q8IV16	184 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	IQCK	Q8N0W5	287 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	RNF169	Q8NCN4	708 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	DBF4B	Q8NFT6	615 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	RFFL	Q8WZ73	363 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	LPP	Q93052	612 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	HPDL	Q96IR7	371 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	RUFY1	Q96T51	708 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	GAD1	Q99259	594 aa		12.45	□□□□□ -0.42
VRK3-223	ENST00000601341	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	12.45	□□□□□ -0.42	1e-6	■■■□□ 15.1

Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms